Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120497.Seq
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_7672| Best HMM Match : 7tm_1 (HMM E-Value=0.48)                     28   9.5  

>SB_49800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 458 IFNYFIRILFYYFTSI*YIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLIC 622
           IF     +L +Y+T   YI     + DRI     ++ T   GI+VI+G  F++ C
Sbjct: 58  IFWMTAAMLVFYYTDF-YIAVK--VDDRINRPWLYLGTALIGINVIVGLYFVVWC 109


>SB_7672| Best HMM Match : 7tm_1 (HMM E-Value=0.48)
          Length = 242

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 456 LFLTILLGFYFT-ILQAYDI*KLLLQLLIEFMDP 554
           L + +L G YF  +  A+D  K L  ++IEF+ P
Sbjct: 92  LHIAVLQGKYFCDVTAAFDATKFLTSMMIEFLQP 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,845,195
Number of Sequences: 59808
Number of extensions: 208249
Number of successful extensions: 338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)