Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120495.Seq
         (745 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)                 28   7.0  
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)                     28   7.0  
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)          28   9.2  
SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)                   28   9.2  

>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 109 NNIISSVKKTNSKHKKFVYWPKDTNALVPLVWRESK 2
           +N IS +    ++ +K V WP+ T+  +PL W + K
Sbjct: 166 DNKISHLTDQVTEWRKLVKWPRITSMCLPLQWSQWK 201


>SB_52094| Best HMM Match : PI-PLC-X (HMM E-Value=0.14)
          Length = 526

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -1

Query: 211 LNSYIVPNYSLAQQYFDLYDENGFRTRIP--IQSACNNIISSVKKTNSKHKK 62
           L S    NYS      ++Y++NGFR  +   I S    +ISS K+ + ++ K
Sbjct: 334 LGSVFKSNYSKGVTLEEVYNDNGFRNSLGFLIPSNITKLISSPKEKDYRNVK 385


>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
          Length = 172

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -1

Query: 121 QSACNNIISSVKKTNSKHKKFVY----WPKDTNALVPLVWRESK 2
           QS    IIS V K N K  KF+     WP D  A V  +W E K
Sbjct: 35  QSPYKAIISQVSKENLKTSKFIMSKKPWPMD-RAKVVRMWIEGK 77


>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 256  NSYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSV-KKT 80
            NS SI +  DLL   L      N++L+     L     F +   ++S  +  I+ V K+ 
Sbjct: 1308 NSDSIRYIADLLSPQLARSTKRNHALSPTLQVLVALRYFASGNFLESTVSRCITDVSKEL 1367

Query: 79   NSKHKKFVYWPKD 41
             + +K+F+ WP D
Sbjct: 1368 VANNKEFIAWPSD 1380


>SB_30915| Best HMM Match : cNMP_binding (HMM E-Value=6.3e-10)
          Length = 673

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 217 KILNSYIVPNYSLAQQYFDLYDENGFRTRIPIQSACNNIISSVKKTN 77
           K+L+ Y V + S+  QY   YDE   R +I  + A  N +  +  T+
Sbjct: 97  KVLSCYFVLSGSVEAQYSIDYDEEDIRGKIAGKDAQGNSLCEINYTH 143


>SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16)
          Length = 1456

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 539 DRHFELIVVFAKMGKTIFDILKRLMRWLL 453
           +R+ EL++V A   K ++D++++L  W L
Sbjct: 681 ERYIELLMVDAAEVKDMYDVMRQLKEWCL 709


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,306,810
Number of Sequences: 59808
Number of extensions: 428084
Number of successful extensions: 997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)