Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120495.Seq
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical p...    30   1.5  
U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    29   3.5  
Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    28   6.1  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    28   8.0  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    28   8.0  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    28   8.0  

>Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical
           protein K04G2.7 protein.
          Length = 257

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 307 YCCRYKYGPRQFYD*ERNSYSINFSQDLLYKILNSYIV--PNYSLAQQYFDLYDENG 143
           YC   K  PR   +  R++     ++D+     +  +V  PNY     YF+L+D+NG
Sbjct: 189 YCVELK--PRSPEENTRSTPQTTSNEDIKSSATSMEVVTSPNYLFPHHYFNLFDQNG 243


>U39855-5|AAA81084.1|  118|Caenorhabditis elegans Hypothetical
           protein F18G5.1 protein.
          Length = 118

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 325 PRALAPYCCRYKYGP-RQFYD*ERNSYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDE 149
           PR ++ Y  ++KYGP RQ+ D E  + S +  +   + + N ++    ++     D + E
Sbjct: 44  PRRISIYAPKFKYGPNRQYSDDENETLSSDEKETENFSVQNPFVTHQGNIKNANLDNHTE 103


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 256 NSYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVK 86
           ++Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  + 
Sbjct: 252 HTYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIG 310

Query: 85  KTN 77
             N
Sbjct: 311 SQN 313


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 256 NSYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVK 86
           ++Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  + 
Sbjct: 252 HTYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIG 310

Query: 85  KTN 77
             N
Sbjct: 311 SQN 313


>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 322 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 432
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
           protein F54E4.1 protein.
          Length = 2948

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 486 KNGFAHFREDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSM 635
           +NGF +F E  N+FK+    HL         +++  +  N + V+ L ++
Sbjct: 12  RNGFLYFDEIKNRFKICKNDHLKHQTSMNAHQVITGALNNGENVYALGNI 61


>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 118 SACNNIISSVKKTNSKHKKFVYWPK 44
           SAC+N    ++  N+  + F YWP+
Sbjct: 29  SACSNFFQFIRLNNNVMESFEYWPR 53


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 256  NSYSINFSQDLLYKILNSYIVPNYSLAQQYF--DLYDENGFRTRIPIQSACNNIISSVKK 83
            NS S N  QDL   +L+   VP  SL Q++   + + ++G + +      CNN ++   K
Sbjct: 1282 NSLS-NLDQDLPNNMLHE--VPIKSLPQEWLWCETWCDDGSKEKAKTIDLCNNPLTKEPK 1338

Query: 82   TNSKHKKFVYW 50
             NS  +    W
Sbjct: 1339 LNSAKRIIKEW 1349


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 256  NSYSINFSQDLLYKILNSYIVPNYSLAQQYF--DLYDENGFRTRIPIQSACNNIISSVKK 83
            NS S N  QDL   +L+   VP  SL Q++   + + ++G + +      CNN ++   K
Sbjct: 1282 NSLS-NLDQDLPNNMLHE--VPIKSLPQEWLWCETWCDDGSKEKAKTIDLCNNPLTKEPK 1338

Query: 82   TNSKHKKFVYW 50
             NS  +    W
Sbjct: 1339 LNSAKRIIKEW 1349


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/68 (20%), Positives = 36/68 (52%)
 Frame = +3

Query: 537 IARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKY 716
           IAR  + N++  I++++      Y+ + +     + +Q + +L+   ++ +  +CD LK 
Sbjct: 231 IAREEMKNEKNRIQKLIQEDEEGYRAMLD----EKKDQRLVYLLEQTDDYIKSLCDLLKQ 286

Query: 717 TEGFTSGT 740
            +  T+G+
Sbjct: 287 QQNATAGS 294


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 130  IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 26
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 130  IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 26
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,558
Number of Sequences: 27780
Number of extensions: 334694
Number of successful extensions: 829
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)