Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120492.Seq
         (849 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     25   0.76 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.76 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.76 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    25   1.00 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   5.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   7.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   7.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   9.3  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 642 TGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHT 752
           TG   +  +  +VHV+   +  F PG +P+  +T +T
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYT 241


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 642 TGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHT 752
           TG   +  +  +VHV+   +  F PG +P+  +T +T
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYT 241


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 642 TGASILAHYFAQVHVSNGYSFEFHPGSQPRTFQTIHT 752
           TG   +  +  +VHV+   +  F PG +P+  +T +T
Sbjct: 205 TGDRQIYPWMRKVHVAGASNGTFAPGMEPKRQRTAYT 241


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 252 REIKLNKGQMLFQTKIYRPD 311
           +EI LN   +LF  K++RP+
Sbjct: 219 KEIALNNDVLLFFVKVFRPE 238


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 205 NCTKYYSCRTTLQNRRFC 152
           NC  YY CR+ L     C
Sbjct: 571 NCAAYYVCRSGLSYHLSC 588


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +2

Query: 101 LAPILSRWLARRNLDCCTKTPILQCRAATIVFCAIWCKTANTILT 235
           L P+L R    RN+   T   +L      I    +W K    IL+
Sbjct: 728 LCPVLLRVSILRNIIVGTLMMVLGTGCVRIKITGVWLKFLRVILS 772


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 461  FFEIDSNSVGVFFLLIDSGGC 399
            F E+ SNS+ +       GGC
Sbjct: 1499 FIEVSSNSITLHLSAWSDGGC 1519


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/19 (31%), Positives = 15/19 (78%)
 Frame = +2

Query: 227 ILTQ*CLTARNKVEQGPNV 283
           ++T+ C++A N +++ PN+
Sbjct: 305 MITKACMSASNLIQRTPNI 323


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 288 QTKIYRPDNNKTDAAVNTSS 347
           Q + YRP  N T    NTSS
Sbjct: 244 QMQSYRPTGNITPHGSNTSS 263


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,266
Number of Sequences: 336
Number of extensions: 3190
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)