Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120492.Seq
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U14635-6|AAP86617.1|  517|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical ...    28   9.6  
AC006633-2|AAK68372.1|  321|Caenorhabditis elegans Hypothetical ...    28   9.6  

>Z75552-6|CAA99939.1|  332|Caenorhabditis elegans Hypothetical
           protein W04D2.2a protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 110 ILSRWLARRNLDCCTKTPILQCRAATIVFCAIWCKTANTIL 232
           IL+ WLA +    CT   I+      +V CA+WC +  T L
Sbjct: 84  ILTGWLAMKGAVYCTHPNIIYISG--MVVCALWCSSCMTAL 122


>U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical
           protein C27H5.4a protein.
          Length = 521

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 542 QFTIVFNFVQRFKFLFLRR*NVSVVDIFFEIDSNSVGVFFLLIDSGG 402
           QF  +  F+    FL +    + V + FFE +S S+G+F++L  S G
Sbjct: 257 QFFRILRFIANENFLIVFTEGLLVNNGFFEKNSGSLGLFYVLARSSG 303


>U14635-6|AAP86617.1|  517|Caenorhabditis elegans Hypothetical
           protein C27H5.4b protein.
          Length = 517

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -2

Query: 542 QFTIVFNFVQRFKFLFLRR*NVSVVDIFFEIDSNSVGVFFLLIDSGG 402
           QF  +  F+    FL +    + V + FFE +S S+G+F++L  S G
Sbjct: 253 QFFRILRFIANENFLIVFTEGLLVNNGFFEKNSGSLGLFYVLARSSG 299


>AC006761-6|AAF60548.2|  242|Caenorhabditis elegans Hypothetical
           protein Y41G9A.2 protein.
          Length = 242

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +1

Query: 682 TCPMGTRLNFIQAVNRERFKLYTP--TASYKGVNFVRRVL 795
           TC +G+ L  IQAV R   ++Y P  T S   ++FV+ ++
Sbjct: 194 TCGLGSFLTVIQAVERP-IQIYLPFCTLSSSAISFVQSII 232


>AC006633-2|AAK68372.1|  321|Caenorhabditis elegans Hypothetical
           protein F35B3.1 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 339 CLQQRPSYYYRADKFLFEITFGPCSTLFRAVKHYCVK 229
           C +    +Y +  K  ++ TFG  S  ++ V H C K
Sbjct: 115 CREDAEDWYRQLSKEFYDETFGQVSAYYKTVCHECGK 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,814,265
Number of Sequences: 27780
Number of extensions: 290026
Number of successful extensions: 903
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)