Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120492.Seq
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49320.1 68414.m05528 BURP domain-containing protein similari...    28   6.8  

>At1g49320.1 68414.m05528 BURP domain-containing protein similarity
           to SP|Q08298 Dehydration-responsive protein RD22
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF03181: BURP domain
          Length = 280

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 444 GIDFEENIDDGDVSAPKKQKLETLNKIKYDSELLLHYLYDDQQ 572
           G D    + DG+   P      TLN +K  ++LL+++  +D Q
Sbjct: 38  GQDISHLLKDGEFDDPSLYMYFTLNDLKLGTKLLIYFYKNDLQ 80


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,406,302
Number of Sequences: 28952
Number of extensions: 251209
Number of successful extensions: 640
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)