Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120491.Seq
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    28   1.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   2.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    27   3.4  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    27   3.4  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    26   5.9  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   7.8  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   7.8  

>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = -2

Query: 208 PSVRNMMMGSKDRISSLLEDVELAKSSD----LFLIRSMAVPSAASMLVPPFASSLS 50
           P++   ++ +   ++S+L    L K+ +    L +  S + P+ AS+L PP ++SLS
Sbjct: 582 PTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASLS 638


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
 Frame = -1

Query: 362 NRCCGATTCAGAWDPHPHRKQVKISWLHHFRNS---FQRIFNYCFRVHFT---NSRIAIR 201
           N CC   TC          +Q    +  HF+N+    ++  N C +  F    +S+  + 
Sbjct: 338 NPCCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLCRQSTNPCDKPEFCTGISSKCPVD 397

Query: 200 QEYDDGLQRQDFIFVGRC 147
           + +DDG   QD + +G C
Sbjct: 398 ENWDDGRICQDSLGMGSC 415


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 296 KISWLHHFRNSFQRIFNYCFRVHFTNSRIA 207
           KI WL HF +   R+  +   +H   SRIA
Sbjct: 5   KIPWLGHFDDRGHRLSIFSIHIHPDGSRIA 34


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
 Frame = -2

Query: 337 AQELGIRILTESK*KYRGFITSVILFSEFLIIVFGFISPTVGSPSVRNM--MMGSKDRIS 164
           AQ  G+  LT+   +  GF  +VILF   L   F  +   + SP +  M   + S   +S
Sbjct: 406 AQNNGVISLTKCANRRAGFFCAVILFFMGLFAKFAAVFVAIPSPVLGGMTTFLFSSVAVS 465

Query: 163 --SLLEDVELAKSSDLFLIRSMAVPSAASMLVP 71
             +++  +   + +   L  SM +   A +LVP
Sbjct: 466 GIAIISQIPFNRRNRFILTASMTLGMGA-ILVP 497


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = +2

Query: 278 DEATIFSLAFGEDADPKLLRKLSLRNNGFARH------IYEASDAALQLRDFYRQVSSPL 439
           DE T+  L   ED D +LL  L    +   RH      +Y   +  + L  F   + S  
Sbjct: 163 DEKTVLVLEDVEDCDRRLLSSLVEALSSLVRHSKLQGCLYTIFNLKIPLEMFDTSLDSKF 222

Query: 440 LSHVK 454
           LS+VK
Sbjct: 223 LSNVK 227


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 6   SKATPENIARAKIIIDRLEANG---GTNIDAALGTAIDLI-RNRSELFANSTSSNKDEIL 173
           SK   E ++ AK  I+ L+      G  + +A     D+  R +  +FA+S+S  K+EIL
Sbjct: 135 SKIASEQLSIAKDQIEALQNENSHLGEQVQSAHQALSDIEERKKQHMFASSSSRVKEEIL 194

Query: 174 SLE 182
             E
Sbjct: 195 VQE 197


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 295 KYRGFITSVILFSEFLIIVFGF 230
           KYR FITS I  + ++I++ G+
Sbjct: 482 KYRSFITSYIGIAAYVIMILGW 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,927
Number of Sequences: 5004
Number of extensions: 56843
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)