Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120491.Seq
(851 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53705| Best HMM Match : Cornifin (HMM E-Value=1.3) 31 1.2
SB_37528| Best HMM Match : Cornifin (HMM E-Value=0.97) 31 1.2
SB_15488| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00019) 31 1.6
SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19) 30 2.1
SB_71| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_44910| Best HMM Match : NinF (HMM E-Value=5.6) 29 6.3
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25) 29 6.3
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 28 8.4
>SB_53705| Best HMM Match : Cornifin (HMM E-Value=1.3)
Length = 308
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP+ ASMLVPP+AS L
Sbjct: 153 SMLVPTYASMLVPPYASML 171
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP ASMLVPP+AS L
Sbjct: 46 LYASMLVPLYASMLVPPYASML 67
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
S+ VP ASMLVPP+ASSL
Sbjct: 201 SILVPPYASMLVPPYASSL 219
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP AS+LVPP+ASSL
Sbjct: 281 SMLVPPYASILVPPYASSL 299
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L S+ VP AS+LVPP+ASSL
Sbjct: 70 LYASILVPPYASILVPPYASSL 91
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -2
Query: 148 VELAKSSDLFLIRSMAVPSAASMLVPPFASSL 53
V L S + L S+ VP ASMLVPP+AS L
Sbjct: 260 VPLYASMLVRLYASILVPPYASMLVPPYASIL 291
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP AS+LVPP+AS+L
Sbjct: 129 SMLVPLYASILVPPYASTL 147
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
S+ VP AS LVPP+ASSL
Sbjct: 17 SILVPPYASTLVPPYASSL 35
>SB_37528| Best HMM Match : Cornifin (HMM E-Value=0.97)
Length = 443
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP ASMLVPP+AS L
Sbjct: 118 LYASMLVPPYASMLVPPYASML 139
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP ASMLVPP+AS L
Sbjct: 150 LYASMLVPPYASMLVPPYASML 171
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP ASMLVPP+AS L
Sbjct: 110 LYASMLVPLYASMLVPPYASML 131
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP ASMLVPP+AS L
Sbjct: 62 LYASMLVPLYASMLVPPYASIL 83
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP ASMLVPP+AS L
Sbjct: 89 SMLVPPYASMLVPPYASML 107
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP ASMLVPP+AS L
Sbjct: 129 SMLVPPYASMLVPPYASML 147
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP ASMLVPP+AS L
Sbjct: 161 SMLVPPYASMLVPPYASML 179
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP ASMLVPP+AS L
Sbjct: 169 SMLVPPYASMLVPPYASML 187
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP ASMLVPP+AS L
Sbjct: 177 SMLVPPYASMLVPPYASML 195
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP ASMLVPP+AS L
Sbjct: 145 SMLVPLYASMLVPPYASML 163
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP ASMLVPP+AS L
Sbjct: 25 SMLVPVYASMLVPPYASIL 43
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP AS+LVPP+AS L
Sbjct: 70 LYASMLVPPYASILVPPYASML 91
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L S+ VP ASMLVPP+AS L
Sbjct: 214 LYASILVPPYASMLVPPYASML 235
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP AS+LVPP+AS L
Sbjct: 206 LYASMLVPLYASILVPPYASML 227
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L S+ VP ASMLVPP+AS L
Sbjct: 374 LYASILVPLYASMLVPPYASML 395
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP AS+LVPP+AS+L
Sbjct: 417 SMLVPLYASILVPPYASTL 435
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
S+ VP ASMLVPP+AS L
Sbjct: 81 SILVPPYASMLVPPYASML 99
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP AS+LVPP+AS L
Sbjct: 254 LYASMLVPLYASILVPPYASIL 275
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP AS+LVPP+AS L
Sbjct: 33 SMLVPPYASILVPPYASIL 51
>SB_15488| Best HMM Match : Peptidase_C5 (HMM E-Value=0.00019)
Length = 589
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = -2
Query: 295 KYRGFITSVILFSE-----FLIIVFGFISPTVGSPSVRNMMMGSKDRISSLLED 149
+Y+G +T + FSE ++++++G + + S RN+M +DR+ S + +
Sbjct: 378 QYKGVVTLELTFSEATDKVYIVVLYGEFNNNMEIDSARNVMYDIQDRLPSFIPE 431
>SB_45592| Best HMM Match : Epimerase (HMM E-Value=1.4e-19)
Length = 672
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 670 VIYPLNVYGPISLSSNCSTQAMPPTLLKKR 759
VI P VYGP+ SNC++ +P LL+++
Sbjct: 195 VINPGLVYGPVLQGSNCTSMEIPCRLLERQ 224
>SB_71| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
SM VP ASMLVPP+AS L
Sbjct: 57 SMLVPPYASMLVPPYASML 75
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP AS+LVPP+AS+L
Sbjct: 238 LYASMLVPLYASILVPPYASTL 259
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L S+ VP ASMLVPP+AS L
Sbjct: 118 LYASILVPLYASMLVPPYASML 139
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP AS+LVPP+AS L
Sbjct: 262 LYASMLVPPYASILVPPYASIL 283
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L SM VP AS+LVPP+AS L
Sbjct: 94 LYASMLVPLYASILVPPYASIL 115
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 118 LIRSMAVPSAASMLVPPFASSL 53
L S+ VP ASMLVPP+AS L
Sbjct: 174 LYASILVPLYASMLVPPYASIL 195
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -2
Query: 109 SMAVPSAASMLVPPFASSL 53
S+ VP ASMLVPP+AS L
Sbjct: 193 SILVPLYASMLVPPYASML 211
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = +3
Query: 171 LSLEPIIIFLTDGDP-TVGEMNPKTIIKNSLKRITEVMKP---RYFHLLSVRMRIPSSCA 338
++L +I F++D + +++ +T ++ ++ E+ KP RY++ + S C+
Sbjct: 1814 ITLSGLITFVSDWKRGNIYKLSIETNVELNITVAEEIKKPTAIRYYNQSRYNF-VESQCS 1872
Query: 339 SCRSATTVLRDTSTRPQTRRCSCATSTDRSP--RLCCH 446
+ L RP +R C+CAT SP + C H
Sbjct: 1873 QNNGGCSDL--CLLRPHSRTCACATGVPLSPDEKTCDH 1908
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 260 EKNYGSDEATIFSLAFGED--ADPKLLRKLSLRNNGFARHIYEASDAALQLRD 412
EKNY E + S+ FG+ + PK L+++ LR F + A + L D
Sbjct: 2866 EKNYAQIEKEMLSIVFGKSLISAPKRLQRMMLRLQKFDLQVNYKRGAEMYLAD 2918
>SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 28.7 bits (61), Expect = 6.3
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 6 SKATPENIARAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEP 185
++A NI KI +D + + G T AL A L+ NS + D+ +
Sbjct: 205 AEANSVNINNMKIFLDGMRSAGFTMYIPALTKAFALL-------LNSKPESPDDC---DQ 254
Query: 186 IIIFLTDGDPT-VGEMNPKTIIKNS 257
+IIFLTD PT + E +TI++++
Sbjct: 255 VIIFLTDVKPTELKESVMRTIVESN 279
>SB_44910| Best HMM Match : NinF (HMM E-Value=5.6)
Length = 113
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 261 KRITEVMKPRYFHLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLC 440
+R+++ K ++L +R + SS S TVL + RP C+ +TD RLC
Sbjct: 6 QRVSDKAKEMVEYVLELRNKGESSNDSIDVLLTVLDGAADRP----CTLEAATDDIKRLC 61
Query: 441 CHMSNLSTH 467
+ S H
Sbjct: 62 LKVVGSSAH 70
>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
Length = 662
Score = 28.7 bits (61), Expect = 6.3
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +2
Query: 311 EDADPKLLRKLSLRNNGFARHIYEAS-DAALQLRDFYRQVSSPLLSHVKFVYAPDQVIES 487
++ D +L++K+ N GF RH+ ++S D AL +Q+SS + + + Y + V S
Sbjct: 305 QNKDLRLMQKILQHNYGFTRHVLKSSTDMALLYSK--KQLSSRIQNLLSLKYKVNPVAHS 362
Query: 488 SV 493
+
Sbjct: 363 DL 364
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 311 EDADPKLLRKLSLRNNGFARHIYEAS-DAALQLRDFYRQVSSPLLSHVKFVYAPDQVIES 487
++ D +L++K+ N GF RH+ ++S D AL +Q+SS + + + Y + V S
Sbjct: 142 QNKDLRLMQKILQHNYGFTRHVLKSSTDMALLYSK--KQLSSRIQNLLSLKYKVNPVAHS 199
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,184,307
Number of Sequences: 59808
Number of extensions: 425944
Number of successful extensions: 3348
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3345
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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