Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120491.Seq
(851 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical ... 30 2.4
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p... 29 3.2
U97015-5|AAB52344.2| 362|Caenorhabditis elegans Hypothetical pr... 29 5.5
U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical pr... 28 7.3
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr... 28 9.7
U43375-6|AAA83623.2| 515|Caenorhabditis elegans Hypothetical pr... 28 9.7
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 28 9.7
AL110485-20|CAB60368.2| 600|Caenorhabditis elegans Hypothetical... 28 9.7
AL110485-6|CAB60353.1| 193|Caenorhabditis elegans Hypothetical ... 28 9.7
>AC024794-1|AAK68497.1| 994|Caenorhabditis elegans Hypothetical
protein Y48G1BM.5 protein.
Length = 994
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 342 CRSATTVLRDTSTRPQTRRCSCATSTDRS 428
C ATT+ R TST +T R T+T RS
Sbjct: 588 CSHATTIRRATSTTTRTSRTGVPTTTSRS 616
>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
protein 36 protein.
Length = 1249
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +2
Query: 269 YGSDEAT-IFSLAFGEDA-DPKLLRKLSLRNNGFARHIYEASDAALQLRDFYRQVSSPLL 442
Y +D+ +F+ G++A D +R+++ N G+ H+ +D ++ + R++S +
Sbjct: 425 YNADKKVRVFTFLVGDEAIDFNEVREMACNNRGYMVHVANMADVDEKIHHYIRRMSRVVG 484
Query: 443 SHVK 454
H K
Sbjct: 485 RHYK 488
>U97015-5|AAB52344.2| 362|Caenorhabditis elegans Hypothetical
protein F48C1.2 protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 33 RAKIIIDRLEANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFLTDGD 212
++K II ++ AN DAA+GT L E+ +S K+ I+S + I + +
Sbjct: 211 QSKDIIWKI-ANKWIETDAAIGTRFQLTSMSKEIITQFSSHFKNRIISASDVEILIRTDN 269
Query: 213 P 215
P
Sbjct: 270 P 270
>U41538-5|AAG00012.2| 762|Caenorhabditis elegans Hypothetical
protein R04E5.2 protein.
Length = 762
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 117 RNRSELFANSTSSNKDEILSLEPIIIFLTDGDPTVGEMNPKTIIKNSLKRITEVM 281
++ +ELF + S + + LE +L + P G MNPK + I EV+
Sbjct: 534 KSAAELFCSEKKSERLSLHMLEMTEKWLLEKTPLFGNMNPKAFENLIQRNIREVL 588
>Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical
protein C11G6.1 protein.
Length = 643
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 404 LRDFYRQVSSPLLSHVKFVYAPDQVIESSVTKTKFVRTTRGPR 532
L+D+ +QV S +L + + PDQ I S F R+ GP+
Sbjct: 87 LKDYAKQVKSEMLHALPVIPVPDQEIAKS--DDNFFRSMYGPK 127
>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical
protein K09H11.3 protein.
Length = 1085
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 323 PKLLRKLSLRNNGFARHIYEASDAALQLRDFYRQVSSPLLSHVKFV--YAPDQVIESS 490
P L R+ S + +++ D ++R + SPLL HV AP QVI SS
Sbjct: 723 PSLSRRRSRAHLSYSKATESPLDKPSEVRRESSSLMSPLLKHVTMTNNSAPSQVITSS 780
>U43375-6|AAA83623.2| 515|Caenorhabditis elegans Hypothetical
protein K09C4.5 protein.
Length = 515
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -2
Query: 295 KYRGFITSVILFSEFL--IIVFGFISPTV 215
KYRGF ++ ++FS+ + +I+F +P V
Sbjct: 149 KYRGFASTALIFSDVIGQVIMFSIATPNV 177
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 285 PRYFHLLSVRMR-IPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLCCHMSNL 458
P+ F LL V PSS +SC S ++ ST P CS + L H +NL
Sbjct: 1004 PKSFKLLHVTTSPSPSSESSCISPAHLISPPSTVPLPSNCSNVKLQNLKTSLQIHENNL 1062
>AL110485-20|CAB60368.2| 600|Caenorhabditis elegans Hypothetical
protein Y46G5A.25 protein.
Length = 600
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 360 VLRDTSTRPQTRRCSCATSTDRSPRLCCHMS 452
+LRD + R +R SC T S LC MS
Sbjct: 84 ILRDQAKRAAMQRGSCETPVTNSANLCLGMS 114
>AL110485-6|CAB60353.1| 193|Caenorhabditis elegans Hypothetical
protein Y46G5A.8 protein.
Length = 193
Score = 27.9 bits (59), Expect = 9.7
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 27 IARAKIIIDRL-EANGGTNIDAALGTAIDLIRNRSELFANSTSSNKDEILSLEPIIIFL 200
I ++I DR E G +ID LGT DL+ N N +DE + + I+ L
Sbjct: 72 ILGSRIGFDRCTELYKGRDIDRLLGTTSDLLDNLHVEHVNLDIRRRDEEVEIHKIVTML 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,087,377
Number of Sequences: 27780
Number of extensions: 326442
Number of successful extensions: 1116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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