Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120491.Seq
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24260.1 68417.m03481 endo-1,4-beta-glucanase, putative / cel...    32   0.56 
At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containi...    29   5.2  
At1g72640.1 68414.m08399 expressed protein                             29   5.2  
At5g09720.1 68418.m01126 magnesium transporter CorA-like family ...    28   9.1  

>At4g24260.1 68417.m03481 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to
           endo-1,4-beta-D-glucanase; cellulase GI:5689613 from
           [Brassica napus]
          Length = 620

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 457 CLRTGSGDREQCYQDQVRTYY-AGSEV 534
           CL+ G GD  QCY+D V  YY AG  +
Sbjct: 142 CLQDGKGDPGQCYKDLVGGYYDAGDSI 168


>At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 297 HLLSVRMRIPSSCASCRSATTVLRDTSTRPQTRRCSCATSTDRSPRLCCHMSNL-STHRI 473
           H  S+ ++  +    C SA  + R+    P+ R C      + +  LC  ++N+  T RI
Sbjct: 177 HTYSLMLKAVAEVKGCESALRMFRELEREPKRRSCFDVVLYNTAISLCGRINNVYETERI 236


>At1g72640.1 68414.m08399 expressed protein
          Length = 330

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 135 FANSTSSNKDEILSLEPIIIFLTDGDPTVGEM 230
           F  + +  K++ L  E  ++F+TDGD  +G+M
Sbjct: 105 FETNEAEEKEDDLDGEKDVVFVTDGDSDLGQM 136


>At5g09720.1 68418.m01126 magnesium transporter CorA-like family
           protein (MRS2-8) contains Pfam profile PF01544:
           CorA-like Mg2+ transporter protein
          Length = 397

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = -2

Query: 295 KYRGFITSVILFSEFLIIVFGFISPTVGSPSVRNMMMGSKDRISSLLEDVELAKSSDLFL 116
           K + F  S+   S+   ++ G     VGS S  ++ +  KD +  LLED E    ++L+L
Sbjct: 198 KIKEFKDSLKEPSKLEYMLLGLYRVKVGSKSEYDVDLQIKDELEQLLEDDE--DMAELYL 255

Query: 115 IRSMAVPSAASM 80
            R +A  S+ ++
Sbjct: 256 SRKLAGASSPAI 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,203,298
Number of Sequences: 28952
Number of extensions: 305348
Number of successful extensions: 1007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)