Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120490.Seq
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0164 - 1342790-1342870,1343031-1343117,1343201-1343319,134...    32   0.48 
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    30   2.0  
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391...    29   4.5  
12_01_0167 - 1250619-1250699,1250824-1250910,1250992-1251110,125...    28   7.9  
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     28   7.9  

>11_01_0164 -
           1342790-1342870,1343031-1343117,1343201-1343319,
           1343405-1343641,1343984-1344044,1344360-1344752,
           1345866-1346165
          Length = 425

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +1

Query: 322 YAILANILQSD-AGTRRGRDHVSVVQARKQNSMFRVQMQ---ILGVLAEHPRRGLAKWLG 489
           ++IL N +Q   +G   G    SVV      S + + +    ILG +     +G+  W+G
Sbjct: 318 FSILLNSVQPVLSGVAIGSGWQSVVAYVNVTSYYFIGIPLGAILGYVLGFQAKGI--WIG 375

Query: 490 HFFKTHVGMPLMLYVLLRTDYKNESDVINE 579
               T V   ++L++ LRTD+K + ++  E
Sbjct: 376 MLLGTLVQTLVLLFITLRTDWKKQVEITRE 405


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +1

Query: 544 TDYKNESDVINE--NNLITQIFVQFFYNLICDKAYSLYTKRDMCVPFVKECKKATIGLRQ 717
           T  +    +IN     LIT+   +  + L   +   L  K +  V   +     + GLR 
Sbjct: 413 TAVEESIQIINSAIQQLITERTSERGFKLFKAQERVLVEKYNSVVSLWRRVSAMSKGLRY 472

Query: 718 EDHERVLSILERAMQGFSTAANGT 789
            D  ++ S+LE A  GF+ A N T
Sbjct: 473 GDAVKLTSMLEEASHGFANAVNST 496


>04_04_1120 +
           31037811-31038813,31038903-31038991,31039094-31039163,
           31039270-31039353,31039452-31039528,31039631-31039712,
           31039847-31039929,31040270-31040333,31040435-31040566,
           31040674-31040777,31040901-31040996,31041144-31041251
          Length = 663

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 771 GETLHCAFQNTQHALVILLAQSDGCFFAFFDKWHAHVA 658
           GE    A ++     V+LL    GC+FA    WHA +A
Sbjct: 80  GEAAAKALRSRSRRPVVLLVDRGGCYFA-LKTWHAQLA 116


>12_01_0167 -
           1250619-1250699,1250824-1250910,1250992-1251110,
           1251200-1251478,1252246-1252660
          Length = 326

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
 Frame = +1

Query: 322 YAILANILQSD-AGTRRGRDHVSVVQARKQNS--MFRVQMQ-ILGVLAEHPRRGLAKWLG 489
           ++IL N +Q   +G   G    SVV      S  +F + +  ILG +     +G+  W+G
Sbjct: 219 FSILLNSIQPVLSGVAVGSGWQSVVAYVNVTSYYLFGIPIGVILGYVLGFQVKGI--WIG 276

Query: 490 HFFKTHVGMPLMLYVLLRTDYKNESDVINE 579
               T V   ++L++ LRTD++ + ++  +
Sbjct: 277 MLLGTLVQTIVLLFITLRTDWEKQVEIARQ 306


>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 339 HITIRRRHPTWTRSCVSRASPQT 407
           +I  RRRH T+T SC  R SP +
Sbjct: 21  YIPPRRRHGTFTSSCAFRLSPSS 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,813,445
Number of Sequences: 37544
Number of extensions: 492169
Number of successful extensions: 1393
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)