Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120490.Seq
         (829 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)         29   6.1  
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)                 28   8.0  
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    28   8.0  

>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -2

Query: 549 IGPKQHVQHERHANMGLKKMSQPFCKPSSRVLSEDAKYLHLHSKH*IL 406
           +GP Q    +       K +S+ F    S     +A ++HLH+ H +L
Sbjct: 74  VGPTQRAAAKEATEPSAKTISKAFSMEMSNSFPFEASFIHLHNLHVVL 121


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +3

Query: 258  KTFFRYFCATSSSNKCPNLGPLCNTCKHITIRRRHPTWTRSCVSRASPQTKFNVSSANAD 437
            K +  Y CAT+ + K P  GP     KHI   +R P      +  A   T    S A++D
Sbjct: 4800 KCYDDYLCATTHT-KLPGFGPQVIRIKHIVRPKRPPKPQIDTIFNAIEPTGPTKSCAHSD 4858

Query: 438  TWR 446
             ++
Sbjct: 4859 IFK 4861


>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +1

Query: 208 KVVLRIKPTTQTTYTIKKHFFDIFARRVHQTSAPI*DHYAILANILQSDAGTRRGRDHVS 387
           K+++R   +    YT  K     F  R HQ      + Y   + I +SD G  RGR  VS
Sbjct: 106 KLIIRKASSVIERYTCIK-----FEERKHQRDYV--EFYMDKSGICESDIGRIRGRQTVS 158

Query: 388 VVQ-ARKQNSMFRVQMQILGVLAEHPR 465
           + Q  R    +    M  LG   EH R
Sbjct: 159 LGQGCRNPGHVTHELMHTLGFYHEHTR 185


>SB_44454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 645 FVHKTRHVRAICQRMQKSNHRI 710
           FVH T HVRA+ QR++    R+
Sbjct: 689 FVHDTFHVRALSQRLRDGQRRV 710


>SB_8504| Best HMM Match : SpoU_methylase (HMM E-Value=1.7e-28)
          Length = 647

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 297 NKCPNLGPLCNTCKHITIRR 356
           NK PNLG LC TC+    +R
Sbjct: 470 NKAPNLGGLCRTCEIFGAKR 489


>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
          Length = 669

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 628 CDKAYSL-YTKRDMCVPFVKECKKATIGLRQEDHERVLSILERAM 759
           CDK   L YTKRD         +     L    H++V+S +E+A+
Sbjct: 473 CDKVSDLAYTKRDKVRDLADTKRDKVSDLADTKHDKVISSVEKAL 517


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +2

Query: 260 NIFSIFLRDEFIKQVPQFRTIMQYLQTYYNPTPAPDVDEIMCQSCKPANKIQCFECKCRY 439
           +IFS    +EF++  P  R  +  L +     P  D+D +   S +   +    +CK  +
Sbjct: 746 HIFSPSASEEFVRAQPNNREPLLGLGSIQLTVPEADLDSLYSWSLEHGMEFSASKCKVVH 805

Query: 440 LASSLST 460
           ++   ST
Sbjct: 806 MSKKRST 812


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,743,773
Number of Sequences: 59808
Number of extensions: 627385
Number of successful extensions: 1768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)