Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120490.Seq
         (829 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   8.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 337 NILQSDAGTRRGRDHVSVVQARKQN 411
           +I+Q+D  TR   D V  ++A K+N
Sbjct: 333 DIIQNDRRTRHLSDRVVALEAEKKN 357


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 431 CRYLASSLSTLDEGLQNGWDIFLRPMLACLS 523
           C+ +ASS+S  +EGL N   I     +  LS
Sbjct: 595 CKVIASSVSAGEEGLGNSLAITALSSILVLS 625


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 306 PNLGPLCNTCKHI 344
           P+  P+CN CK +
Sbjct: 29  PSKEPICNICKRV 41


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -3

Query: 272 SKKCFLIVYVVCVVGLILKTTFYGNNTFVKFCKKSKTFTVHDQALVEI 129
           SK     +Y  CV+ L     ++G    V     S + T+   A V I
Sbjct: 847 SKHIGFTMYTTCVIWLAFVPLYFGTGNNVALRITSMSVTISLSASVTI 894


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,581
Number of Sequences: 438
Number of extensions: 5180
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)