Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120489.Seq
         (850 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   4.0  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.0  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 246 SCHTRSNTWWT 278
           +CHT +NT+W+
Sbjct: 224 ACHTLANTFWS 234


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 360 ICATFTVVADHDHARDHVLLTADLVRDLGP 449
           IC T  ++A+H   ++ +L   + V D  P
Sbjct: 307 ICYTLMLLANHREVQEEILKEMEAVLDEEP 336


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 360 ICATFTVVADHDHARDHVLLTADLVRDLGP 449
           IC T  ++A+H   ++ +L   + V D  P
Sbjct: 307 ICYTLMLLANHREVQEEILKEMEAVLDEEP 336


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 628 NVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAE-QLFEAINTMQQTQRNEL 804
           N   + AL   ++ + +++    S++ DSL D+  ++DKL    L  ++  + Q  +N L
Sbjct: 342 NQDKIVALRQEQETLKSQVQRE-SDVVDSLKDVIEIVDKLLNPDLGLSLLQVAQIFKNLL 400

Query: 805 NN 810
            N
Sbjct: 401 EN 402


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,492
Number of Sequences: 336
Number of extensions: 3743
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)