Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120489.Seq
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,627...    30   2.0  
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147...    29   3.5  
01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310...    29   6.2  
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044...    28   8.2  

>09_02_0250 + 6266818-6267029,6267230-6267287,6267999-6268118,
            6272359-6272511,6273381-6273586,6274280-6274733,
            6276573-6276610,6276923-6277046,6277184-6277246,
            6277350-6277412,6277526-6278152,6278267-6278294,
            6278373-6278413,6278689-6278851,6278987-6279039,
            6279217-6279262,6279373-6279444,6279578-6279741,
            6279968-6280099,6280249-6280565,6280721-6280892,
            6281009-6281107,6281275-6281349,6281446-6281504,
            6281647-6281836,6281982-6282020
          Length = 1255

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 779  IVLMASNNCSANLSNMSVKSGNESVISESNVFN 681
            +V + SN CS    NMS+KS  E + ++SN F+
Sbjct: 944  VVCLGSNTCSNKTKNMSIKS--EHIYNKSNQFD 974


>05_06_0096 +
           25513535-25514024,25514139-25514236,25514395-25514783,
           25515485-25515599,25515816-25515917,25516584-25516734,
           25517162-25517250,25517518-25517566,25517723-25517763,
           25517929-25518116,25518285-25518402,25518900-25519079,
           25519172-25519294,25519368-25519455,25519549-25519679,
           25519768-25519866,25520822-25521253
          Length = 960

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
 Frame = +3

Query: 279 FTERPF*FCERLARLPTSC*AHLLQTIICATFTVVADHDHARDHVLLTADLVRDLG--PG 452
           F   PF   E    LP+   + LL++++CA       +D+AR  V     ++   G   G
Sbjct: 295 FLHTPFPSSEIYRTLPSR--SELLRSVLCADLVGFHTYDYARHFVSACTRILGLEGTPEG 352

Query: 453 L-DRGHVHRLP----GKDGDKYSTAGKNSSSKRHVDEQRQ 557
           + D+G + R+     G D +++  A +  + KRH+ E  Q
Sbjct: 353 VEDQGRLTRVAAFPIGIDSERFKRALELPAVKRHITELTQ 392


>01_07_0256 -
           42328795-42329172,42330245-42330379,42330783-42331033,
           42331290-42331341,42331619-42331647,42331812-42332105,
           42332229-42332378,42333915-42334405,42334513-42334613,
           42334941-42335037,42335882-42335950,42336036-42336122,
           42336423-42336494,42336795-42336863,42337784-42337858,
           42338230-42338301,42338378-42338449,42338533-42338676,
           42339106-42339177,42339294-42339365,42339804-42339954,
           42340204-42340297
          Length = 1008

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
 Frame = -3

Query: 404 SSVIVIGDDGKSSTNNCLQ*MCSATGRQTSKAFAKSKRTLRKCPPCI*PCMTRSARIVDH 225
           S ++   ++  ++ +N L    + T  +T   F KS     KCP C      R  R++ +
Sbjct: 324 SLILDFQNNSLTNLSNPLSPPANVTILRTENGFLKSSFMEEKCPSCY--VRVRKIRLIGN 381

Query: 224 FSMFRWDGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVI---RRLHISKYC 72
              F  DG       L     ++  + +VD K   +  + +     +L+I++YC
Sbjct: 382 LDFFCIDGIVMYSATLLFLNKLMDTLAKVDMKQNMLSGNPICTSPNQLNITQYC 435


>01_06_1593 +
           38502884-38502993,38503580-38503665,38504352-38504497,
           38504817-38504933,38505028-38505144,38505858-38506001,
           38506099-38506251
          Length = 290

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 622 NQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLFEAINTMQQTQRNE 801
           N+ + +L   E   D+I TRLN  ++ + D L  +   +D   +Q    +  +  T R E
Sbjct: 206 NEPLHVLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREE 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,897,503
Number of Sequences: 37544
Number of extensions: 388816
Number of successful extensions: 1043
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)