Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120489.Seq
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 29   3.6  
SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)                      28   8.3  
SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +3

Query: 387  DHDHARDHVLLTADLVRDLGPGLDRGHVHRLPGKDGDKYSTAGKNSSSKRHVDEQRQPNK 566
            D D  RD    T+D++RD     D     R   +D D+     + SS  RH D +R  ++
Sbjct: 1054 DRDR-RDRDRHTSDIMRDEPRDRDSKRGSRESSRDRDRLRERDRESSRDRH-DRERDRDR 1111

Query: 567  SQPN*SIFRIVQRDDGRAQSKRAAP 641
            S+    + R   RD  R + +   P
Sbjct: 1112 SRDRDRV-RDRDRDRDRDRDRERVP 1135


>SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)
          Length = 586

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 25/77 (32%), Positives = 36/77 (46%)
 Frame = -3

Query: 821 IELVLFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITSLAVSNAA 642
           I +VLF     +  IVL+  NNC+     +   +GN SVI    +  ++K     VS A 
Sbjct: 464 IVVVLFVQTLMIMTIVLLMRNNCAC----VGSVAGNNSVIGLLLMIIVIKPIQYDVSVAM 519

Query: 641 RSCTF*LRTPVITLDNS 591
                 L T +I L+NS
Sbjct: 520 M-----LHTQIICLENS 531


>SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 206 DGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVIRRLHI 84
           D E+K L  L  H    +  ++ DP+NR+    N+ ++LH+
Sbjct: 181 DSEEKHLDELIEHAREELTSVKTDPENRKYPFVNLHKKLHL 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,504,129
Number of Sequences: 59808
Number of extensions: 470841
Number of successful extensions: 1267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)