Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120489.Seq
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    29   4.2  
Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z49126-3|CAA88941.2|  374|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>Z81059-3|CAB02927.1|  246|Caenorhabditis elegans Hypothetical
           protein F11F1.5 protein.
          Length = 246

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 10/65 (15%)
 Frame = +1

Query: 670 ILTRLNTLLSEITD---SLPDLTLMLDKLAE-------QLFEAINTMQQTQRNELNNTNS 819
           I T +  LL+E+ D   SLPD+   L K+ +       +   AIN ++ T + ELN    
Sbjct: 166 IFTLIKQLLNEVADILQSLPDILGKLSKIVDDKNLTSIEKNNAINQLKGTNKIELNTIIF 225

Query: 820 ILTNL 834
           I+T L
Sbjct: 226 IITQL 230


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 842 LDAKLVKIELVLFNSLRCVCCIVLMASNNCSANLSNMSVKSGNESVISESNVFNLVKITS 663
           LDAKL +    L + + C+   +    NNC   + N+ ++ G+E  +++  V   +   S
Sbjct: 663 LDAKLCEDYGNLEDIVLCIFISMEELPNNCEIIMGNLIIEGGDEDYVTKLRVLEFL-FGS 721

Query: 662 LAVSN 648
           L + N
Sbjct: 722 LIIQN 726


>Z81059-5|CAJ15164.1|  176|Caenorhabditis elegans Hypothetical
           protein F11F1.8 protein.
          Length = 176

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +1

Query: 607 MTGVRNQNVQ-LLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDK---LAEQLFEAIN 774
           + G  N  ++ L++ +    + +L  +  +L  + D L DL+ ++D     + +  +AIN
Sbjct: 81  LLGSANDELKNLISTVFKLIEQLLNEVADILQSLPDVLGDLSKIVDDKNLTSVEKIDAIN 140

Query: 775 TMQQTQRNELNNTNSILTNL 834
            ++ T + ELN    I+T L
Sbjct: 141 QLRGTNKIELNTIIFIITQL 160


>Z49126-3|CAA88941.2|  374|Caenorhabditis elegans Hypothetical
           protein DH11.4 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 447 PGLDRGHVHRLPGKDGDKYSTAGKN 521
           PG     VHR P  +G KY  AGK+
Sbjct: 108 PGARANRVHRDPRPNGTKYGRAGKH 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,601,275
Number of Sequences: 27780
Number of extensions: 355680
Number of successful extensions: 950
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)