Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120489.Seq
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03360.1 68416.m00334 F-box family protein low similarity to ...    29   3.9  
At4g18240.1 68417.m02709 starch synthase-related protein contain...    29   5.2  
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    28   6.8  

>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 346 YCKQLFVLLLPSSPITITLEITFSSRQTSFAISVP 450
           +CK+L VL L  SP  ITLEIT   R     +  P
Sbjct: 221 FCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAP 255


>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
 Frame = +1

Query: 595 LSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITD---SLPDLTLMLDKLAEQLFE 765
           L    +G+ +    L + L  +++ + ++L+TL  E TD    +  L L+LD+  +Q  +
Sbjct: 316 LEKECSGLESSVKDLESKLSVSQEDV-SQLSTLKIECTDLWAKVETLQLLLDRATKQAEQ 374

Query: 766 AINTMQQTQ--RNELNNTNSIL 825
           A+  +QQ Q  RN+++     L
Sbjct: 375 AVIVLQQNQDLRNKVDKIEESL 396


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 143 GLHLSKFKNAFASVSTTFVHHP-I*T*KNDQRCGRIVSYTVKYMVDIYGASVLILRTPC 316
           G+H  KF  AF  +S++      I   KN + C R    T KY+   YG  +L+  T C
Sbjct: 822 GIHSEKFAMAFGLISSSGASKTTIRILKNLRMC-RDCHDTAKYVSKRYGCDILLEDTRC 879


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,690
Number of Sequences: 28952
Number of extensions: 316711
Number of successful extensions: 891
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)