Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120488.Seq
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0008 + 141405-142421                                             33   0.36 
10_02_0110 - 5371536-5372882                                           32   0.48 
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242...    32   0.63 
02_05_0612 + 30348495-30348995,30349679-30350023                       30   2.6  
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    30   2.6  
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    29   4.5  
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549...    29   5.9  
11_01_0755 - 6343084-6345172,6345526-6346367                           28   7.8  

>06_01_0008 + 141405-142421
          Length = 338

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +2

Query: 239 PNPAPSPDSVAKQGDPL-YLHPH-TVLITKSGVIQLIMK 349
           P+P+PSP   A+  DP  +LH H T L++    IQ++++
Sbjct: 89  PSPSPSPSPAARHFDPSNFLHDHFTGLLSGGATIQIVLE 127


>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = -2

Query: 333 ITPDLVMSTVCGCKY----SG-SPCFATLSGDGAGFGRHAQTSICTCRRRGHVLPVHNLH 169
           I+PD  +S +   +Y    +G S C+    G   G  R  Q S+CT R R H L VH   
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378

Query: 168 ILNC-WRC 148
            +N  W C
Sbjct: 379 AMNLRWFC 386


>12_01_0318 -
           2425178-2425267,2425830-2426008,2426594-2426654,
           2426851-2427160,2428514-2428777,2432595-2433865
          Length = 724

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +2

Query: 506 NQIWRKQPIAHFVCQRNDCGSTRR*NGSARLRKRAP 613
           NQ+ R      FVC R  C   RR  G ARLR+ +P
Sbjct: 419 NQVLRLVLFIVFVCSRLACALLRRRRGRARLRRASP 454


>02_05_0612 + 30348495-30348995,30349679-30350023
          Length = 281

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 754 VFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSRRA 605
           V C R NA          R W +  +L +A+ +  M A  LA C+V  R+
Sbjct: 229 VLCFRCNACKASALDTVRRNWRAVAVLNVAVLAILMLAYSLACCSVRDRS 278


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +2

Query: 329 VIQLIMKSKLPYAIELQEWLL--EEVIPQV--LCTGKYAPAVEMDTNDVIAKIDDLTQKL 496
           V+ ++   +  + +EL+E     E ++ Q+      ++AP+VE    +V A I+ +T+K+
Sbjct: 268 VMAILKNRREKFTLELKELQRKRENLLAQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKI 327

Query: 497 TVANQIWRK 523
            +  + W+K
Sbjct: 328 IMEEEKWKK 336


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 331 HARFGNEHCVWVQIQRVALLCHA 263
           H  FG++H + VQ+Q  A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225


>12_02_0942 -
           24653834-24654046,24654346-24654482,24654626-24654959,
           24655067-24655153,24655254-24655580
          Length = 365

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/62 (24%), Positives = 33/62 (53%)
 Frame = +3

Query: 627 LANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKTIAWPQPENDWVLTTSSF 806
           L ++M++++   +    N   C+S+ V D+ NN  +  RP +       +++ + TTS++
Sbjct: 280 LESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQC-----SDSNEITTTSTY 334

Query: 807 SS 812
            S
Sbjct: 335 DS 336


>11_01_0755 - 6343084-6345172,6345526-6346367
          Length = 976

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 425 KYAPAVEMDTNDVIAKIDDLTQKL-TVANQIWRKQ 526
           +Y+P +E+D   ++ K D L   L +V N +WR++
Sbjct: 350 EYSPELELDLPSILEKCDGLPLALVSVGNFLWRER 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,400,416
Number of Sequences: 37544
Number of extensions: 572315
Number of successful extensions: 1944
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1943
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)