Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120488.Seq
         (823 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)          31   1.5  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)                 29   4.6  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 28   8.0  

>SB_38071| Best HMM Match : ABC_membrane (HMM E-Value=1.2e-11)
          Length = 1214

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 24/90 (26%), Positives = 42/90 (46%)
 Frame = -1

Query: 790 RTQSFSGCGQAIVFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAVSR 611
           R  SF    +  V+C   +  +LL  +     + SC +L   ++ C +S   L+ C VS 
Sbjct: 225 RVLSFIALLRRAVYCCAMSCRALLCCA-----FFSCAVLYRVVSCCVVSCRVLSCCIVSC 279

Query: 610 RAFSQSCRAVSASRRATIISLANKMSDRLL 521
           R    SCR +S    + ++ L   +S R++
Sbjct: 280 RVV--SCRVLSCCIVSCLVVLYRVVSCRVV 307


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 546  ANEMIVARRDAETARQDCENARRETAQLANRMADIAQDVIAKPSNPQLC 692
            A+ ++V R DAE   +     RR     +N    I  ++ +K +NP LC
Sbjct: 3361 ASSLVVVREDAEPVAR---RRRRRAVDTSNTTTPITTNLTSKVTNPSLC 3406


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -2

Query: 303 CGCKYSGSPCFATLSGDGAGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 142
           C C Y G+     +S   A   R A+  +CT  R   +L  +N  + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224


>SB_45790| Best HMM Match : SERTA (HMM E-Value=2.8e-07)
          Length = 1213

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 688 SCG-LLGLAITSCAMSAMRLASCAVSRRAFSQSCRAVS 578
           SC  LLGL ++    SAM +  C +S R   Q CR +S
Sbjct: 465 SCSSLLGLELSDELESAMWICPCTISIRTGMQRCRWIS 502


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 298 VQIQRVALLCHAIWRWCWIWSACS--NVDLYLPST 200
           V +QRV ++C  +W  C I+SA +   V +Y P T
Sbjct: 157 VTVQRVLIICGGMWVSCSIFSAVTLYGVHVYHPVT 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,091,184
Number of Sequences: 59808
Number of extensions: 609740
Number of successful extensions: 1657
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)