Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120487.Seq
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    29   0.63 
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    27   3.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   5.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   5.8  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   7.7  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   7.7  

>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -1

Query: 416 HRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLT 261
           HR+DI++  Q  +      L+   K Q  +N+ ++ K + EK + L  DN++
Sbjct: 59  HRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVS 110


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 582 NEEFKVILKNFITDLKKNQKLNYFNSLIDQLINVYTDTSAKNTQPDVLAKNY*IHLVL*A 761
           +E  K + K     L+K+ K  +    I   I ++  T     Q DVLAK Y I+L    
Sbjct: 353 SERLKSMRKALRNILEKDLKNKHSWKHITDQIGMFCYTGLNPQQVDVLAKQYHIYLTKNG 412

Query: 762 RFAV 773
           R ++
Sbjct: 413 RISI 416


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -3

Query: 342 NANRRKRVGQYQVDERKTKKARMRQSHRQLEIYGIHDNRLNNKKIR 205
           N    + VG  Q  E K +  +++Q +   + +G +DN  +NKK R
Sbjct: 256 NPETNESVGILQNQESK-RNEQIKQQYMPADNFGSNDNHSHNKKRR 300


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -1

Query: 416 HRVD--IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKS 303
           HR++  ++  ++ E++  +S L++L+  Q+D N   N+K+
Sbjct: 735 HRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 339 ANRRKRVGQYQVDERKTKKARMRQSHRQLEIYGIHDNRLNNKKIRNYYLKK 187
           ANR +R      ++ +T+      SHR+ E Y  H +R +     NY+ K+
Sbjct: 132 ANRHRRK-----EKERTRSNHRHGSHRRHEPYRTHLSRHHRHSTTNYHSKR 177


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 327 FVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWCVKY 437
           F   RF+Q+  +R   +   L + N I PM+++C KY
Sbjct: 586 FKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC-KY 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,947,950
Number of Sequences: 5004
Number of extensions: 55626
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)