Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120487.Seq
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      31   1.2  
SB_33335| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_35414| Best HMM Match : NinE (HMM E-Value=8.4)                      29   6.3  

>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/95 (27%), Positives = 41/95 (43%)
 Frame = -3

Query: 348  DQNANRRKRVGQYQVDERKTKKARMRQSHRQLEIYGIHDNRLNNKKIRNYYLKKICILLN 169
            D +   R+     ++D++K KKA+   S       G  D+R N  K R     K+     
Sbjct: 943  DSSDGERRERSTSRIDKKKNKKAQREYSDTSSGSEGESDSRDNRAKERASEKSKLS---- 998

Query: 168  LNFKHVIESSFDKNHIVAKLCDRRALKNGKPCRAS 64
             +     E++ D   I+ KL + RA K  +  RAS
Sbjct: 999  -DKSRTSENTPDPKEIMNKLNNIRAFKEQRRMRAS 1032


>SB_33335| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -3

Query: 231 NRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDRRALKNGKPC 73
           N+  N+K  N   K     +   F  +I+  F K+H + K+ +R  +K    C
Sbjct: 107 NKRKNRKRNNIICKNTSTKIGHKFLSLIDKHFPKDHKLRKIFNRNTIKISYSC 159


>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 596 SDFKKFYHRFKKEPKIKLFQQFNRPVNQRVHRHV 697
           SD KK Y+ FK   K+K+ ++     N   H H+
Sbjct: 201 SDIKKIYNTFKFSKKVKMSKKDKITYNNATHCHI 234


>SB_35414| Best HMM Match : NinE (HMM E-Value=8.4)
          Length = 172

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +3

Query: 600 ILKNFITDLKKNQKLNYFNSLIDQLI---NVYTDTSAKNTQPDVL 725
           IL+N  + L  NQ++N+FN++I  ++   NV   T  K +Q  +L
Sbjct: 30  ILRNIRSYLPLNQRINHFNAIIKPVMNYANVIWSTCDKESQYRIL 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,250,208
Number of Sequences: 59808
Number of extensions: 376409
Number of successful extensions: 1167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)