Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120487.Seq
(845 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 32 0.59
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 32 0.59
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 32 0.59
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 32 0.59
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 32 0.59
U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical pr... 29 4.2
AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidas... 29 4.2
Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical pr... 28 7.3
AC006833-7|AAF60945.1| 289|Caenorhabditis elegans Hypothetical ... 28 9.6
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -1
Query: 404 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSL 252
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +SL
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESL 191
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -1
Query: 404 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSL 252
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +SL
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESL 191
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -1
Query: 404 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSL 252
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +SL
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESL 191
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -1
Query: 404 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSL 252
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +SL
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESL 205
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = -1
Query: 404 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSL 252
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +SL
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESL 191
>U53141-3|AAA96105.3| 596|Caenorhabditis elegans Hypothetical
protein C14C11.3 protein.
Length = 596
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = -1
Query: 521 SFIQKENILRLYTNTY*RKVQSIRGLKNIFYAPYTHRVDIINMDQFEQLINVSLLKSLIK 342
S + K + L + N Y RK + + P+ ++ + D+ E + S+ +
Sbjct: 495 SELSKNHHLMGWANRYNRKYNISQNWYHREMLPFVQQL-VGQYDRVESDLRASMKDLYFE 553
Query: 341 TQIDENVSDNIKSMSEKL 288
IDE + +N+ MSEKL
Sbjct: 554 NTIDEFIYENLGEMSEKL 571
>AM748821-1|CAO72175.2| 596|Caenorhabditis elegans hexosaminidase
protein.
Length = 596
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = -1
Query: 521 SFIQKENILRLYTNTY*RKVQSIRGLKNIFYAPYTHRVDIINMDQFEQLINVSLLKSLIK 342
S + K + L + N Y RK + + P+ ++ + D+ E + S+ +
Sbjct: 495 SELSKNHHLMGWANRYNRKYNISQNWYHREMLPFVQQL-VGQYDRVESDLRASMKDLYFE 553
Query: 341 TQIDENVSDNIKSMSEKL 288
IDE + +N+ MSEKL
Sbjct: 554 NTIDEFIYENLGEMSEKL 571
>Z66519-3|CAA91372.1| 634|Caenorhabditis elegans Hypothetical
protein B0334.3b protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 273 RQSHRQLEIYGIHDNRLNNKKIRNY 199
+Q RQ+ Y D+R+N++K+RN+
Sbjct: 43 KQQCRQITDYSAKDSRINSRKLRNH 67
>Z66519-2|CAA91381.1| 634|Caenorhabditis elegans Hypothetical
protein B0334.3a protein.
Length = 634
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 273 RQSHRQLEIYGIHDNRLNNKKIRNY 199
+Q RQ+ Y D+R+N++K+RN+
Sbjct: 43 KQQCRQITDYSAKDSRINSRKLRNH 67
>AC006833-7|AAF60945.1| 289|Caenorhabditis elegans Hypothetical
protein ZK616.7 protein.
Length = 289
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 599 DFKKFYHRFKKEPKIKLFQQFNRPVNQRVHRHVS 700
DFK+ + +P L FN+PVN + +R+++
Sbjct: 5 DFKQEFSNLPGDPPSDLCTAFNQPVNNKKNRYLN 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,324
Number of Sequences: 27780
Number of extensions: 307003
Number of successful extensions: 924
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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