Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120487.Seq
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    25   1.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    25   1.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.7  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 234 DNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNH 124
           D+ +N+KK     LK++C+L       +I+  FD  H
Sbjct: 20  DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNVH 56


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 234 DNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNH 124
           D+ +N+KK     LK++C+L       +I+  FD  H
Sbjct: 3   DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNVH 39


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 579 TNEEFKVILKNFITDLKKNQKLNY 650
           T E+FKVI+ N+I    +N   N+
Sbjct: 332 TPEQFKVIIDNWIKGTPQNNVPNW 355


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 431 YAPYTHRVDII-NMDQFEQLI 372
           Y PYT RV+I+ ++D+ + L+
Sbjct: 468 YDPYTQRVEILDSVDRLDNLM 488


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 507 FLDKTPTEFDLILDLHKLQNV 569
           FL++  ++FD ILD +K +++
Sbjct: 816 FLNEVISDFDAILDQNKFKDI 836


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,991
Number of Sequences: 438
Number of extensions: 3989
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)