Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120487.Seq
         (845 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r...    30   2.2  
At1g33410.1 68414.m04136 expressed protein                             29   3.9  
At3g18970.1 68416.m02408 pentatricopeptide (PPR) repeat-containi...    28   6.8  

>At3g59820.1 68416.m06675 calcium-binding mitochondrial
           protein-related contains weak similarity to
           Calcium-binding mitochondrial protein Anon-60Da
           (Swiss-Prot:P91927) [Drosophila melanogaster]
          Length = 755

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 527 SRSFIQKENILRLYTNTY*RKVQSIRGLKNIFYAPYTH 414
           SR+ ++++NI+  Y N Y R +QS + + N     ++H
Sbjct: 3   SRAIVRRKNIISDYLNVYARSIQSFQYIGNSSQTVHSH 40


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 543  LDLHKLQNVAFFTNEEFKVILKNF 614
            +D+ KLQN   FT  E+ + LKNF
Sbjct: 1178 IDIEKLQNEFVFTTAEYMLSLKNF 1201


>At3g18970.1 68416.m02408 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 472

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 273 RQSHRQLEIYGIHDNRLNNKKIRNYYLK 190
           +Q H QL I G HDN L  K I +Y  K
Sbjct: 25  KQIHAQLVINGCHDNSLFGKLIGHYCSK 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,842
Number of Sequences: 28952
Number of extensions: 261522
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)