Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120486.Seq
(776 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 124 2e-27
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ... 48 3e-04
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 47 5e-04
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru... 46 0.001
UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent viru... 44 0.006
UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat... 41 0.030
UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 39 0.12
UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Vir... 35 2.0
UniRef50_Q4Q0Y2 Cluster: Putative uncharacterized protein; n=3; ... 35 2.0
UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosa... 35 2.6
UniRef50_UPI0000E4A9A2 Cluster: PREDICTED: similar to ankyrin re... 34 4.6
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 34 4.6
UniRef50_Q6WGM0 Cluster: Attachment glycoprotein; n=1; Mossman v... 33 6.0
UniRef50_Q6CGV5 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 33 6.0
UniRef50_P10667 Cluster: Integumentary mucin A.1 precursor; n=1;... 33 6.0
UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 33 6.0
UniRef50_Q6A564 Cluster: Cellulosomal anchoring scaffoldin B pre... 33 8.0
UniRef50_A7QHY9 Cluster: Chromosome chr17 scaffold_101, whole ge... 33 8.0
UniRef50_A6S4A8 Cluster: Putative uncharacterized protein; n=1; ... 33 8.0
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 124 bits (299), Expect = 2e-27
Identities = 59/61 (96%), Positives = 60/61 (98%)
Frame = +3
Query: 327 YLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATL 506
YLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEG NVLATPSSARIT+GGLALMHQATL
Sbjct: 115 YLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGFNVLATPSSARITMGGLALMHQATL 174
Query: 507 P 509
P
Sbjct: 175 P 175
Score = 99 bits (238), Expect = 6e-20
Identities = 54/85 (63%), Positives = 54/85 (63%)
Frame = +2
Query: 2 PLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQXXXXXXXXXXXXXXXXXXXXXXXX 181
PLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQ
Sbjct: 6 PLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQPLPSSDSVVLSSQPLPPAPPPPLG 65
Query: 182 XXXXXXXQRLIIPFQRLYFDLTGTE 256
QRLIIPFQRLYFDLTGTE
Sbjct: 66 SSLGRSPQRLIIPFQRLYFDLTGTE 90
Score = 97.1 bits (231), Expect = 4e-19
Identities = 44/63 (69%), Positives = 47/63 (74%)
Frame = +2
Query: 506 PCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGTKAPLSSEAPSAYRTPSSM 685
PCDLGYINPIIKSPIPYTNHPRLNIHFHQS DAVLEG+RAG KA + + P
Sbjct: 175 PCDLGYINPIIKSPIPYTNHPRLNIHFHQSADAVLEGVRAGVKASVVIRGSISVSHPLVT 234
Query: 686 GMG 694
G G
Sbjct: 235 GHG 237
Score = 50.0 bits (114), Expect = 6e-05
Identities = 25/34 (73%), Positives = 27/34 (79%)
Frame = +1
Query: 256 TKSNSVTVQSLPNVSSIIRGYRDGILSILKLSFF 357
TKSNSVTVQSLPNVSSII+GYRD L L+ F
Sbjct: 91 TKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVF 124
>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
Globe virus|Rep: 25kDa coat protein - Grapevine Red
Globe virus
Length = 235
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/72 (34%), Positives = 38/72 (52%)
Frame = +3
Query: 330 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLP 509
L +LE VFP PS P++ D W ++ V++ G +L+T R+T GG ++ P
Sbjct: 110 LQSLELTVFPKNPSYTYPMSFDAHWHSSSVSITGSQILSTYGGTRVTFGGPI---TSSNP 166
Query: 510 AISATSTRSSNP 545
I RS+NP
Sbjct: 167 IILPADLRSTNP 178
Score = 45.2 bits (102), Expect = 0.002
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Frame = +2
Query: 215 IPFQRLYFDLTGTEPNRTVSLCNHYRTSPPSSEATATVXXXXXXXXXXXXXXXQNTSHS* 394
+PFQ +++DLT E T SL + PP T+ +N S++
Sbjct: 71 LPFQFIFYDLTNAETGFT-SL--DLASKPPFLSLTSPYAYAVLQSLELTVFP-KNPSYTY 126
Query: 395 PLLDYC*RHS*RSQCAGHPFIRSHYYWR---SRPYASSYP---PCDLGYINPIIKSPIPY 556
P+ HS G + ++ R P SS P P DL NP++K + Y
Sbjct: 127 PMSFDAHWHSSSVSITGSQILSTYGGTRVTFGGPITSSNPIILPADLRSTNPVVKDTVSY 186
Query: 557 TNHPRLNIHFHQSPDA 604
N P+L + FH++ DA
Sbjct: 187 NNTPKLTVAFHKNTDA 202
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 47.2 bits (107), Expect = 5e-04
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 330 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLP 509
L L+A+V P+A S + P+T+DL W+T +V + +L R IGG L H L
Sbjct: 1858 LAELKAIVCPTAASFQSPITLDLVWSTNNVIFTDLQILQVYGGTRFAIGGPLLSHTYELR 1917
Query: 510 A 512
A
Sbjct: 1918 A 1918
>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
virus|Rep: Coat protein - Grapevine fleck virus
Length = 230
Score = 45.6 bits (103), Expect = 0.001
Identities = 29/77 (37%), Positives = 36/77 (46%)
Frame = +3
Query: 282 ITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSA 461
+T R H RL +LEA V P+A S P TVDLCWT VT +L+ +
Sbjct: 96 VTVARPYRHARL-----TSLEAFVQPTASSATYPQTVDLCWTIDSVTPARSEILSVFGAQ 150
Query: 462 RITIGGLALMHQATLPA 512
RI G + LPA
Sbjct: 151 RIAWGSVHFSAPILLPA 167
Score = 33.5 bits (73), Expect = 6.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +2
Query: 506 PCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRA---GT---KAPLSSEAPSAY 667
P +L +NP IK + YT+ PRL F+++ V G A G+ + + AP
Sbjct: 166 PAELSSLNPTIKDSVTYTDCPRLTCGFYRNDACVALGSSAPICGSILIRGVIECSAPINR 225
Query: 668 RTPSS 682
TPSS
Sbjct: 226 PTPSS 230
>UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent
virus|Rep: Coat protein - Erysimum latent virus (ELV)
Length = 202
Score = 43.6 bits (98), Expect = 0.006
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = +3
Query: 321 RRYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGG 479
R L L AVV PSA S+ P+TV L W A T +L T +I++GG
Sbjct: 80 RAQLTQLHAVVSPSAVSIGHPLTVQLIWVPASSTTTSSQILGTYGGQQISVGG 132
>UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat
protein - Ononis yellow mosaic virus
Length = 192
Score = 41.1 bits (92), Expect = 0.030
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 330 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGG 479
+V EAV+FP++ S K PV DL W ++ + +L T R T+GG
Sbjct: 72 IVECEAVLFPNSTSSKNPVHCDLIWVPSNSSASPKTILQTYGGNRFTVGG 121
>UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 911
Score = 39.1 bits (87), Expect = 0.12
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3
Query: 345 AVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQAT-LPAISA 521
A++ P+A +L +P DL T D+T T + +T ALM AT L +A
Sbjct: 551 ALMVPTATALMVPTATDLTTTATDLTTTATATDLTTTVTDLTTTATALMETATALTVPTA 610
Query: 522 TS-TRSSNPRFHTPTTPDLTSISINPLT 602
T T + PT DLT ++ LT
Sbjct: 611 TDLTVPTATDLTVPTATDLTVPTVTDLT 638
Score = 35.5 bits (78), Expect = 1.5
Identities = 23/86 (26%), Positives = 39/86 (45%)
Frame = +3
Query: 345 AVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISAT 524
A++ P+A L +P DL T D+T ++ T ++ + ALM AT + T
Sbjct: 690 ALMVPTATDLMVPTATDLTTTVTDLTTTATALMETATALTVPT-ATALMETATALTV-PT 747
Query: 525 STRSSNPRFHTPTTPDLTSISINPLT 602
+T P T P T++++ T
Sbjct: 748 ATALMVPTATDLTVPTATALTVPTAT 773
>UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Virion
protein - Dulcamara mottle virus
Length = 188
Score = 35.1 bits (77), Expect = 2.0
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +3
Query: 321 RRYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGG 479
R LV L + P+ ++ PVTVD+ W A+ T +L+ R IGG
Sbjct: 69 RAKLVELFLTITPTQLAIDNPVTVDVVWVPANSTATPSKILSVYGGQRFLIGG 121
>UniRef50_Q4Q0Y2 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 2193
Score = 35.1 bits (77), Expect = 2.0
Identities = 25/87 (28%), Positives = 41/87 (47%)
Frame = +3
Query: 276 CAITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPS 455
C I+ ERL+HH+R R+Y + A P + S + + C T A V + +P+
Sbjct: 143 CYISIERLVHHERKRRKYYL---ATPLPPS-SATVTAGSNGCATAASVAANAIAAGTSPT 198
Query: 456 SARITIGGLALMHQATLPAISATSTRS 536
+ +G + + QA I+ T T S
Sbjct: 199 TMVSDVGS-SFLQQALPTGIAGTITIS 224
>UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosaic
virus|Rep: Virion protein - Wild cucumber mosaic virus
Length = 188
Score = 34.7 bits (76), Expect = 2.6
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 330 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGG 479
L++ +A++ P + +P+TVDL W +A+ ++L + T GG
Sbjct: 72 LLSAKAIITPFDGVVSLPITVDLAWVSANSPASPTDILKIYGGSSYTFGG 121
>UniRef50_UPI0000E4A9A2 Cluster: PREDICTED: similar to ankyrin repeat
domain protein 17; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ankyrin repeat
domain protein 17 - Strongylocentrotus purpuratus
Length = 2216
Score = 33.9 bits (74), Expect = 4.6
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +2
Query: 491 ASSYPPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGTKAPLSSEAPSAYR 670
++S P +L + +PI P P P N SP R+GT +P +S A +
Sbjct: 2037 SASMPHANLSHFSPITNPPAPSPTPPNANASPGTSP-------RSGTTSPSTSAAAQDRK 2089
Query: 671 TPSSMGMGKRG 703
P +G +RG
Sbjct: 2090 LPRPIGTERRG 2100
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 33.9 bits (74), Expect = 4.6
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 330 LVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQAT-L 506
L ++E V P A + P++V WT A ++ + + T+GG LM T L
Sbjct: 2072 LTSVELEVCPLAAAFSKPISVSAVWTIASISPASASETSYYGGRLFTVGGPVLMSSTTHL 2131
Query: 507 PA 512
PA
Sbjct: 2132 PA 2133
Score = 33.1 bits (72), Expect = 8.0
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 491 ASSYPPCDLGYINPIIKSPIPYTNHPRLN 577
++++ P DL +NP++K P+ YT+ PR +
Sbjct: 2127 STTHLPADLTRLNPVLKGPVKYTDCPRFS 2155
>UniRef50_Q6WGM0 Cluster: Attachment glycoprotein; n=1; Mossman
virus|Rep: Attachment glycoprotein - Mossman virus
Length = 632
Score = 33.5 bits (73), Expect = 6.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 450 PSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSIS 587
P R+T G +H+ + S ++ R+ NPR P+T +LTS++
Sbjct: 491 PIRGRVTFDGQVTLHEHSRTYDSLSNQRACNPRLGCPSTCELTSMA 536
>UniRef50_Q6CGV5 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 982
Score = 33.5 bits (73), Expect = 6.0
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 402 WTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATST---RSSNPRFHTPTTPD 572
WTT V +E L+TP S IT A + ++T PA S ST +S P P+T +
Sbjct: 101 WTTEVVVME---CLSTPVSVPITTTDPATIPESTEPATSTESTTSPETSPPISEEPSTSE 157
Query: 573 LTSISINPLT 602
+ S P+T
Sbjct: 158 EPTTSEKPIT 167
>UniRef50_P10667 Cluster: Integumentary mucin A.1 precursor; n=1;
Xenopus laevis|Rep: Integumentary mucin A.1 precursor -
Xenopus laevis (African clawed frog)
Length = 400
Score = 33.5 bits (73), Expect = 6.0
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 342 EAVVFPSAP-SLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAIS 518
E P+ P + +P T + TT T E V TP + + T+P
Sbjct: 132 ETTTVPTTPETTTVPTTPET--TTVPTTPETTTVPTTPETTTVP----TTPETTTVPTTP 185
Query: 519 ATSTRSSNPRFHT-PTTPDLTSISINPLT 602
T+T + P T PTTP+ T++ P T
Sbjct: 186 ETTTVPTTPETTTVPTTPETTTVPTTPET 214
Score = 33.5 bits (73), Expect = 6.0
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 342 EAVVFPSAP-SLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAIS 518
E P+ P + +P T + TT T E V TP + + T+P
Sbjct: 141 ETTTVPTTPETTTVPTTPET--TTVPTTPETTTVPTTPETTTVP----TTPETTTVPTTP 194
Query: 519 ATSTRSSNPRFHT-PTTPDLTSISINPLT 602
T+T + P T PTTP+ T++ P T
Sbjct: 195 ETTTVPTTPETTTVPTTPETTTVPTTPET 223
Score = 33.5 bits (73), Expect = 6.0
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +3
Query: 342 EAVVFPSAP-SLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAIS 518
E P+ P + +P T + TT T E V TP + + T+P
Sbjct: 150 ETTTVPTTPETTTVPTTPET--TTVPTTPETTTVPTTPETTTVP----TTPETTTVPTTP 203
Query: 519 ATSTRSSNPRFHT-PTTPDLTSISINPLT 602
T+T + P T PTTP+ T++ P T
Sbjct: 204 ETTTVPTTPETTTVPTTPETTTVPTTPET 232
Score = 33.1 bits (72), Expect = 8.0
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 405 TTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHT-PTTPDLTS 581
TTA T E V TP + + T+P T+T + P T PTTP+ T+
Sbjct: 125 TTASTTAETTTVPTTPETTTVP----TTPETTTVPTTPETTTVPTTPETTTVPTTPETTT 180
Query: 582 ISINPLT 602
+ P T
Sbjct: 181 VPTTPET 187
>UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Cacao yellow mosaic virus
Length = 188
Score = 33.5 bits (73), Expect = 6.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 506 PCDLGYINPIIKSPIPYTNHPRLNIH 583
PC L INPIIK + YT+ P+L I+
Sbjct: 131 PCPLTNINPIIKDSVTYTDTPKLLIY 156
>UniRef50_Q6A564 Cluster: Cellulosomal anchoring scaffoldin B
precursor; n=1; Bacteroides cellulosolvens|Rep:
Cellulosomal anchoring scaffoldin B precursor -
Bacteroides cellulosolvens
Length = 2299
Score = 33.1 bits (72), Expect = 8.0
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 360 SAPSLKIPVTVDLCWTTADVTVEGV--NVLATPSSARITIGGLA-LMHQATLPAI--SAT 524
+ PS+ IP T VT+ V ATPS+A T+ A T+P + + T
Sbjct: 1209 ATPSVTIPTVTPTATATPSVTIPTVTPTATATPSAATPTVTPTATATPSVTIPTVTPTVT 1268
Query: 525 STRSSNPRFHTPTTPDLTSISINPLTP 605
+T S TPT S + +TP
Sbjct: 1269 ATPSDTIPTVTPTATATPSAIVTTITP 1295
>UniRef50_A7QHY9 Cluster: Chromosome chr17 scaffold_101, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_101, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 103
Score = 33.1 bits (72), Expect = 8.0
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 435 NVLATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHT-PTTPDLTSI 584
N ++ SS R+T L L+H +L AI++ +T +S+P + P TP T I
Sbjct: 29 NGSSSVSSGRVTSVSLLLIHHKSLHAIASKATAASSPSSSSPPATPTQTPI 79
>UniRef50_A6S4A8 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 684
Score = 33.1 bits (72), Expect = 8.0
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 345 AVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISAT 524
A V P S + P+ + AD G+ V TP+++ T+ ++ H +LP+++A
Sbjct: 394 AAVIPKELSAETPIELP-AELPADFFYGGITVDNTPTASP-TVSSISASHSGSLPSMNAL 451
Query: 525 STRSSNPRFHTPT---TPDLTSI 584
+ S+ P F + TP +SI
Sbjct: 452 AISSAEPSFERGSESITPTRSSI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 745,048,211
Number of Sequences: 1657284
Number of extensions: 14823122
Number of successful extensions: 48369
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 45261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48224
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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