Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120486.Seq
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.43
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 28 1.7
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 27 2.3
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 27 3.0
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha... 27 3.0
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi... 26 5.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.2
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 6.9
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 6.9
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 6.9
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy... 25 9.2
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S... 25 9.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +3
Query: 369 SLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPR 548
S +P T C T+ + G + L+TP + + + +P S +ST +++
Sbjct: 219 SSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTS-STSIPIPPTSTSSTDTNSSP 277
Query: 549 FHTPTTPDLTSISINP 596
T +T TS SI P
Sbjct: 278 LPTTSTSCTTSTSIPP 293
Score = 29.9 bits (64), Expect = 0.43
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +3
Query: 345 AVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISAT 524
+V + S P P+T C T+ + V +TP + ++ + +T S
Sbjct: 455 SVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNY 514
Query: 525 STRSSNPRFHTP--TTPDLTSISI 590
+ SS P TP TT TS S+
Sbjct: 515 TISSSTPVTSTPVTTTNCTTSTSV 538
Score = 29.5 bits (63), Expect = 0.56
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Frame = +3
Query: 360 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSS 539
S P PVT C T+ V V +TP + ++ + +T S + SS
Sbjct: 519 STPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSS 578
Query: 540 NPRFHTP--TTPDLTSISI 590
P TP TT TS S+
Sbjct: 579 TPVTSTPVTTTNCTTSTSV 597
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 490 IRARPPIVMRADEGVASTLTPSTVTSAVVQQRSTVTGILR 371
I A P +R+ AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 476 RSRPYASSYPPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVL 610
+S PY Y C L PI+ + IPY + LN + Q+ L
Sbjct: 57 KSLPY--KYDNCKLSICVPIVTTCIPYHSVENLNFNIRQNISTTL 99
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 405 TTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPRFH 554
+ +DV V+ N L + + ++ A L I+A + NP FH
Sbjct: 177 SVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFH 226
>SPAC29B12.04 |snz1||pyridoxine biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 27.1 bits (57), Expect = 3.0
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = -2
Query: 595 GLMEMDVKSGVV-GVWNRGFDDRVDVAEIAGRVA*CIRARPPIVMRADEGVASTLTPSTV 419
GL +M +K GV+ V N ++ +AE AG A R P +RA GVA PS +
Sbjct: 14 GLAQM-LKGGVIMDVVNA---EQARIAEAAGACAVMALERVPADIRAQGGVARMSDPSMI 69
Query: 418 TSAVVQQRSTVTGILRLG 365
V +R+G
Sbjct: 70 KEIQAAVSIPVMAKVRIG 87
>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 485 PYASSYPPCDLGYINPIIKSP 547
PYA+ +P L Y NP SP
Sbjct: 96 PYAAEHPFSRLAYFNPAFNSP 116
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 513 ISATSTRSSNPRFHTPTTPDLTSIS 587
IS +ST N FH PT TS S
Sbjct: 804 ISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 288 TERLLHHQRLPRRYLVNLE 344
T LHH+R+P YL +L+
Sbjct: 285 THYFLHHRRMPNAYLTDLK 303
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 416 RHS*RSQCAGHPFIRSHYYWRSRPYASSYPPCDLGYINPIIKSPIPYTN 562
R S + C P SH+ W PY ++ P Y N I S I Y++
Sbjct: 399 RDSSDTSCTESPPEPSHFAWAFDPYNATASP----YYNQNINSSIDYSS 443
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 6.9
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +3
Query: 336 NLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATP-SSARITIGGLALMHQATLPA 512
N A FPS S +P VDL DV+ E L+TP S +I G + +++ +
Sbjct: 342 NSYAGAFPSVVSASLPTKVDLN-HQMDVSDEEQRFLSTPLGSFDESILGSSPINRLSSSF 400
Query: 513 ISATSTRSSNPRFHTPTTPDLTSISINPLTPY 608
TS+ S P T T+ + S++ + Y
Sbjct: 401 KQYTSSLKS-PGLSTRTSSTMNSLNSSRFGAY 431
>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 452 RGGQHIDSFNCDVSSSPTKVNCDWYFEARGGRKNDSFKIDKIPSR*PLMMEETFG 288
+GG+H + + P +V + Y+ A+ R +F+I R PL + FG
Sbjct: 13 KGGKHGEFRQESDTFGPIQVPAEKYWGAQTQRSLQNFRIGGEKERLPLPLVRAFG 67
>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 178 RIFPGTVSS--TFDHPFSTPVLRSYWHRTKSNSVTVQSLPNVSSIIRGYRDGILSIL 342
++FPG S T + F PV R Y NSV+ +S VS + R D +L ++
Sbjct: 141 KLFPGINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSC--VSILSRKPGDSVLIVI 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,613
Number of Sequences: 5004
Number of extensions: 59179
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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