Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120486.Seq
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.77
03_04_0192 + 18302114-18302362,18302664-18302732,18302752-183028... 31 1.3
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 29 3.1
01_05_0227 - 19512866-19514983 29 5.4
01_01_0796 + 6190931-6192745 29 5.4
08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275... 28 7.2
02_05_0345 - 28142434-28142658,28143087-28143158,28143252-281433... 28 7.2
02_02_0640 - 12528075-12528363,12531326-12532311 28 7.2
12_02_0985 + 25052753-25053691 28 9.5
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 510 AISATSTRSSNPRFHTPTTP 569
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>03_04_0192 +
18302114-18302362,18302664-18302732,18302752-18302823,
18303545-18303710,18303967-18304604
Length = 397
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 447 TPSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPT-TPDLTSISINP 596
TP+S++ T G A+ A +PA + + ++N TPT P + + NP
Sbjct: 29 TPASSKATAGAAAVGRAARIPASRSRGSATTNKAMATPTVAPSSRAKASNP 79
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 375 KIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRS 536
K+ V +D TAD+++ +N+L P G L+HQ + A T +
Sbjct: 209 KVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACCTHA 262
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 427 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 335
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 480 LALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKLRCHQRLH 659
L+++ A++ + RS +FH TP + ++ L+ +E A + ++L
Sbjct: 37 LSILTGASVAVVIEDQNRS---KFHAVGTPTVQAVVDAALSSDVEEAAAEARPVADEQLM 93
Query: 660 QRIAP-PRQWGWVKG 701
+RIAP R+ W+KG
Sbjct: 94 ERIAPLERELAWLKG 108
>08_01_0311 -
2753062-2753232,2753340-2753381,2754490-2754667,
2755021-2755118,2755964-2756098,2756280-2756444,
2756529-2756693,2757082-2757299,2758508-2758811
Length = 491
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -2
Query: 580 DVKSGVVGVWNRGFDDRVDVAEIAGRVA*CIRARPPIVMR 461
+V+ G+VGV G + ++A +AG V RA PP+ +R
Sbjct: 13 EVRYGIVGVGMMGREHLHNLAHLAGEVG---RAEPPVRLR 49
>02_05_0345 -
28142434-28142658,28143087-28143158,28143252-28143371,
28143483-28143674,28144919-28145017,28145448-28145594,
28146310-28146513
Length = 352
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 518 RDRREGSLMHKGETANSNASG*RGGQHIDSFNCD 417
R R S+ G +AN SG R G H SF+CD
Sbjct: 9 RLRVYSSVSGDGRSANGAGSGKRVGTHNGSFHCD 42
>02_02_0640 - 12528075-12528363,12531326-12532311
Length = 424
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +3
Query: 279 AITTERLLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 413
A T L RLPRR+L+ L FP+ PSL P+ +D TA
Sbjct: 65 AATLLPLRRSLRLPRRHLLCL----FPTDPSLASPILLDPAAPTA 105
>12_02_0985 + 25052753-25053691
Length = 312
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -2
Query: 490 IRARPPIVMRADEGVASTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLT 332
+ +R + +R D S+ + +T S + S + GAEG TTAS LT
Sbjct: 127 VSSRTGLFLRGDCHRNSSASNATNCSIPAETMSRMVPTASCGAEGNTTASALT 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,735,374
Number of Sequences: 37544
Number of extensions: 431228
Number of successful extensions: 1373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -