Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120486.Seq
         (776 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_34943| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        30   1.8  
SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)              29   4.2  
SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)                 29   4.2  
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056)                  29   4.2  
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)               29   5.5  
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)                        28   9.7  
SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    28   9.7  
SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19)                     28   9.7  
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                28   9.7  

>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
 Frame = +3

Query: 357 PSAPSL-KIPVTVDLCWTTADVTVEGVNVLATPSSARITIGGLALMHQATLPAISATSTR 533
           PS PS    P+T     T    +  G     +  S   T    +L H  + P+  +T + 
Sbjct: 407 PSTPSTPSTPITPRTPSTPCTHSTPGTPSTPSTPSTPSTPSTPSLTHTPSTPSTPSTPST 466

Query: 534 SSNPRFHTPTTPDLTSISINPLTP 605
            S P   TP+TP   S    P TP
Sbjct: 467 PSTPS--TPSTPSTPSTPSTPSTP 488



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 444 ATPSSARITIGGLALMHQATLPAISATSTRSSNPRF-HTPTTPDLTSISINPLTP 605
           +TPS+   T    +L H  + P+  +T +  S P   +TP+TP   S    P+TP
Sbjct: 662 STPSTPS-TPSTPSLTHTPSTPSTPSTPSTPSTPSMPNTPSTPSTPSTPSTPITP 715


>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 492 HQATLPA-ISATSTRSSNPRFHTPTTPDLTSISINPLTP 605
           HQ+  P  ++  S +S+NPR HTP  P   S +  PLTP
Sbjct: 72  HQSNTPRPLTPPSRQSNNPRPHTP--PSCQSNTPRPLTP 108


>SB_34943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = +3

Query: 528 TRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKLRCHQRLHQRIAP 674
           TR   P  HTP TP  T            E+      R H RLH  + P
Sbjct: 56  TRRVRPLLHTPVTPKPTHAEYTHAEYTHAEYTHAYTRRVHPRLHTPVTP 104


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 360 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARIT 470
           S P  K+P+T     T+A+VT    +++ +PS A +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_34354| Best HMM Match : Motile_Sperm (HMM E-Value=0.6)
          Length = 716

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 24/73 (32%), Positives = 33/73 (45%)
 Frame = +3

Query: 420 TVEGVNVLATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPL 599
           TV GV ++  P           ++HQ TL  +   S  S N RFH P T +    + NP 
Sbjct: 4   TVAGVRIV--PPVVEFFDAETDVVHQMTL-TVQNLSKCSRNIRFHGPATNNFKLKAKNPD 60

Query: 600 TPY*KEFAPGLKL 638
            P     APGL++
Sbjct: 61  RP----IAPGLEV 69


>SB_10901| Best HMM Match : SAM_1 (HMM E-Value=2.5e-09)
          Length = 1472

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 366 PSLKIPVTVDLCWTTADVTVEGVNVLATPSSARIT 470
           P  K+P+T     T+A+VT    +++ +PS A +T
Sbjct: 816 PETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 850


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 444 ATPSSARITIGGLALMHQATLPAISATSTRSSNPRFHTPTTPDLTSISINPLT 602
           A+P+  R ++G LA   + + P   +T    S  R  TP+TP   S    P T
Sbjct: 183 ASPA-LRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTPST 234


>SB_24761| Best HMM Match : LRR_1 (HMM E-Value=0.0056)
          Length = 298

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 461 SHYYWRSRPYASSYPPCDLGYINPIIKSPIPYT 559
           SH   RSR  ASSY P D+G ++ ++   +P+T
Sbjct: 122 SHGAVRSRLRASSYWPRDVGNLSHLLLKAVPWT 154


>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
          Length = 1249

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
 Frame = +3

Query: 351  VFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIGG---LALMHQATLPAISA 521
            V P++     P   D+   + D   +  + + T S  ++T      L        P+ S 
Sbjct: 889  VTPTSDDQVTPSASDVPTASDDQVTQSASNVPTASDNQVTPSASDVLTAKDDHVTPSASD 948

Query: 522  TSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 626
              T S +    T +  D+TS S N +TP+  +F P
Sbjct: 949  VPTTSDDQV--TQSASDVTSTSDNQITPFASDFTP 981


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +3

Query: 528 TRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKLRCHQRLH 659
           TR  +PR HTP+TP  T            E+    K R H RLH
Sbjct: 70  TRLVHPRLHTPSTPTATH----------AEYTHAYKRRAHPRLH 103


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +3

Query: 528 TRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKLRCHQRLH 659
           TR  +PR HTP+TP  T            E+    K R H RLH
Sbjct: 70  TRLVHPRLHTPSTPTATH----------AEYTHAYKRRAHPRLH 103


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 555 TPTTPDLTSISINPLTPY 608
           TPT PD+T +SI  L PY
Sbjct: 75  TPTRPDVTQLSITGLKPY 92


>SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)
          Length = 335

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 504 LPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 605
           L AI  T   +  P  H P+ P+LT + + P+ P
Sbjct: 117 LAAIENTFEAAKKPIHHHPSKPNLTPVEVLPVFP 150


>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 380 TSHS*PLLDYC*RHS*RSQCAGHPFIRSHYYWRSRPY 490
           T +   LL YC     R   AGHPF+   Y +  R Y
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVY 127


>SB_3737| Best HMM Match : DM (HMM E-Value=6.1e-19)
          Length = 312

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
 Frame = +3

Query: 297 LLHHQRLPRRYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSARITIG 476
           ++H+QR      V+L A +FPS     + + +  C     + +E +    T SS R+   
Sbjct: 200 VMHYQRRTPPLPVDLLAKIFPSIDRRVLGLLLQGCDNNVVLAIECIVNNNTTSSGRLFEF 259

Query: 477 GLALMHQATLPAISATSTRSSNPRFHTP-TTPDLTSISINPLTP 605
                  +  PA+     R    R   P   PD   +S   L P
Sbjct: 260 ERHAAASSDSPAVKLPEQRPIRKRVTPPRLIPDARGVSHEELFP 303


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +2

Query: 524 INPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGTKAPLSSEAPSAYRTP 676
           I  II S IP  + P        +P A      + T AP +S+APSA  TP
Sbjct: 263 ITSIISSAIPRGHLPTTP---STTPQATPPSTTSQTTAPTASQAPSAGETP 310


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,067,515
Number of Sequences: 59808
Number of extensions: 466459
Number of successful extensions: 1651
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1601
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)