Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120486.Seq
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family...    31   0.85 
At4g08380.1 68417.m01384 proline-rich extensin-like family prote...    31   1.1  
At5g57710.1 68418.m07214 heat shock protein-related contains sim...    30   1.5  
At4g01530.1 68417.m00198 hypothetical protein                          28   6.0  

>At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; related to vegetative cell wall
           protein gp1 [Chlamydomonas reinhardtii]
           gi|12018147|gb|AAG45420
          Length = 175

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = +2

Query: 485 PYASSYPPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGTKAPLSSEAPSA 664
           P   + PP  LG  N   +SPI Y++ P        SP             P  S++PS+
Sbjct: 37  PLIHASPPSKLGSHNSPAESPIEYSSPPEPETEHSPSPSPA-NSPSVSPPLPNDSQSPSS 95

Query: 665 YRTPS 679
             +PS
Sbjct: 96  SASPS 100


>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
           contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 437

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 461 SHYYWRSRPYA-SSYPPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGTKA 637
           S Y ++S PY  SS PP       P   SP PY   P  + + ++SP  V         +
Sbjct: 125 SPYVYKSPPYVYSSPPPYVYSSPPPYAYSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYS 184

Query: 638 PLSSEAPSAYRTP 676
           P  S  P  Y++P
Sbjct: 185 PPPS--PYVYKSP 195



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +2

Query: 461 SHYYWRSRPYASSYPPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGTKAP 640
           S Y ++S PY  S PP       P   SP PY   P  + + ++SP  V         +P
Sbjct: 188 SPYVYKSPPYVYSSPP-------PYAYSPPPYAYSPPPSPYVYKSPPYVYSSPPPYAYSP 240

Query: 641 LSSEAPSAYRTP 676
             S  P  Y++P
Sbjct: 241 PPS--PYVYKSP 250


>At5g57710.1 68418.m07214 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 990

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 220 FSTPVLRSYWHRTKSNSVTVQSLPNVSSIIRGYRDG 327
           FS+P +++   ++ +NSVT   +P+VSS+   +R G
Sbjct: 152 FSSPAVKATIEQSLNNSVTPTPIPSVSSVGLNFRPG 187


>At4g01530.1 68417.m00198 hypothetical protein 
          Length = 239

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 238 RSYWHRTKSNSVTVQSLPNVSSIIRGYRDGILSIL-KLS 351
           R  WH TKS   TV++ P +   +     G L++  KLS
Sbjct: 49  RLIWHHTKSERYTVKTPPKIKHFLWQIASGFLAVTSKLS 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,144,760
Number of Sequences: 28952
Number of extensions: 327646
Number of successful extensions: 1008
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)