Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120483.Seq
(840 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0) 32 0.67
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 31 1.2
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8) 31 1.5
SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014) 30 2.0
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0) 30 2.0
SB_5548| Best HMM Match : PT (HMM E-Value=3.1) 30 2.0
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045) 30 2.7
SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15) 29 3.6
SB_4288| Best HMM Match : DUF1165 (HMM E-Value=2.8) 29 3.6
SB_16871| Best HMM Match : DUF1168 (HMM E-Value=9.9) 29 3.6
SB_37780| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 29 4.7
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 29 4.7
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1) 29 4.7
SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17) 28 8.2
SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 28 8.2
SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36) 28 8.2
SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2) 28 8.2
SB_24428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_44922| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=0)
Length = 1596
Score = 31.9 bits (69), Expect = 0.67
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 253 SSPAENGDAEESNDASENGDATEKKETG 336
S E G A E+ +ASE G+A+E ETG
Sbjct: 36 SETGEAGKASEAGEASETGEASEASETG 63
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEP-KESPVKKSPAKKVEAAESNGKENGTDEAPE 253
D+KE EE+ EP KE PV++ ++ E +E DE P+
Sbjct: 245 DEKEREQEELVEEEPKKEEPVEEETKQEEPVEEEPKQEEAVDEEPK 290
>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
Length = 360
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVR 259
D DK E PEE +P+E P + +P K E + + E+ ++ PE +
Sbjct: 304 DKLEDKPEDRPEEKPEDKPEEKP-EDNPEDKPEYKQEDKPEDKQEDKPECK 353
>SB_53502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +2
Query: 92 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGT 238
+ MAD E P E T T E+ K+P+ E E G+E +
Sbjct: 32 IQNMADEEGKATEATPPEATETPAAEAAPAKAPSADAEVQEEAGEETAS 80
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAP 250
+KKE +E TE S KSPA K + S N +D++P
Sbjct: 523 EKKEDEGKEPDKTEQTTSAKSKSPASKDGKSRSQKGSNSSDDSP 566
>SB_32573| Best HMM Match : His_leader (HMM E-Value=0.0014)
Length = 134
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 397 SSREWSFLLFLHQEPQISSSHQSLSFLWHHRSQMHRCFLQHHH 269
SS ++ H P SSS S+ + HH + HHH
Sbjct: 76 SSSSSIIIIIHHHHPSSSSSSSSIIIIHHHHPSSSSIIIIHHH 118
>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 803
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/71 (32%), Positives = 34/71 (47%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKKATMH 298
D++ VA + V+S P+ A + S G NG+ EAPE KMV +K
Sbjct: 459 DEEGVAAQGVSSVTPEAGSALSVIALEERGRSSTGSPNGSLEAPEELQEKMVGGEKKG-- 516
Query: 299 LRTVMPQKRKR 331
T + +KRK+
Sbjct: 517 -DTKLKEKRKQ 526
>SB_5548| Best HMM Match : PT (HMM E-Value=3.1)
Length = 157
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 137 PEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253
PE+ T +P++ PV+K P K E E+ ++ PE
Sbjct: 70 PEDRTEYKPEDKPVEKKPEGKPENQPEKKPEDKPEDKPE 108
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 104 ADAAVDKKEVAPEE-VTSTEPKESPVKKSPAKKVEAAESNGKENGTD 241
+D ++ E+A EE VTS E E V PA+KVEA+ +E G +
Sbjct: 823 SDVPTEEAEMATEEAVTSVEEAEDKV---PAEKVEASIEEAEEPGEE 866
>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 122 KKEVAPEEVTSTEPKESPVKKSPAKKVEA-AESNGKENGTDEAPE 253
K E APEEV + + +ESP ++ K+ +A E KE +E E
Sbjct: 242 KVEDAPEEVEAPKEEESPKEEDTPKEEDAPKEDTPKEEAKEEPKE 286
>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
Length = 191
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 95 ATMADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDE 244
A A+A +KK APEE + + K+ V++S K A +G+ N D+
Sbjct: 58 AKAAEAQPEKKAEAPEEKPAEDSKDQAVEESETKD---ASKDGEGNAADK 104
>SB_41376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 364 HQEPQISSSHQSLSFLWHHRSQMHRCFLQHHHFQQANFWGFI 239
HQ P+ +S +L + Q H + HHFQ F+ FI
Sbjct: 132 HQAPRDLIDRESFIYLGTNNRQDHFKPTRQHHFQPVRFFSFI 173
>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
Length = 979
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKETG 336
S S E G+A E+ +ASE G+A+E E G
Sbjct: 738 SEASKAGEAGEAVEAGEASEAGEASEAGEAG 768
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKETGVKRKSV 354
S +E G+A E+ +ASE G+A++ E G ++V
Sbjct: 465 SEAGGASEAGEASEAGEASEAGEASKASEAGEASEAV 501
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKETG 336
S S E G+A E+ +ASE G+A E E G
Sbjct: 655 SEASKAGEAGEAVEAGEASEAGEAIEAGEAG 685
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKETGVKRKSVA 357
S +E G+A E+ +ASE G+A+E E +++A
Sbjct: 918 SEAGEASEAGEASEAGEASEAGEASEAVEASEASEAIA 955
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +1
Query: 271 GDAEESNDASENGDATEKKETGV 339
G+A E+ +ASE G+A+E E GV
Sbjct: 771 GEASEAGEASEVGEASEAGENGV 793
>SB_4288| Best HMM Match : DUF1165 (HMM E-Value=2.8)
Length = 162
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 140 EEVTSTEPKESPVKKSP---AKKVEAAESNGKENGTDEAPEVRLLK 268
E+V S+ PK+ +K P KK EA E +E DE E +K
Sbjct: 115 EKVASSSPKKREPRKKPKAGKKKEEAVEEESEEESMDEKNEAVKVK 160
>SB_16871| Best HMM Match : DUF1168 (HMM E-Value=9.9)
Length = 100
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 140 EEVTSTEPKESPVKKSP---AKKVEAAESNGKENGTDEAPEVRLLK 268
E+V S+ PK+ +K P KK EA E +E DE E +K
Sbjct: 53 EKVASSSPKKREPRKKPKAGKKKEEAVEEESEEESMDEKNEAVKVK 98
>SB_37780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVK--KSPAKKVEAAESNGKEN 232
D + AP VTS+ P + P+K K+ + +AA SN + N
Sbjct: 116 DVTQSAPTRVTSSLPSKQPIKSSKTSRSQTKAAPSNARLN 155
>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKETG 336
S +E G+A E+ +ASE G+A+E E G
Sbjct: 46 SEAGEASEAGEASEAGEASEAGEASEAGEAG 76
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKETG 336
S +E G+A E+ +ASE G+A E E G
Sbjct: 52 SEAGEASEAGEASEAGEASEAGEAGEASEAG 82
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKETG 336
S +E G+A E+ +ASE G+A E E G
Sbjct: 202 SEAGEASEAGEASEAGEASEAGEAGEASEAG 232
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKK 286
+ + V PE V E +S V+K+P KK ++ E ++ E+ ++K+ K+
Sbjct: 1509 EPESVPPESVPHKELGKSKVEKTPEKKKGKEKTEDSEEYYEDTEEIVVVKIKRKKR 1564
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 279 SITIFSRRTSGASSVPFSLPLLSA--ASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAAS 106
S+++F +S S S LS S+ L DFLT S S +TSS + S T++S
Sbjct: 573 SLSVFLTSSSSLSDFLTSSSSLSVFLTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSS 632
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -1
Query: 234 PFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAI 100
P SLP S+ L DFLT S S +TSS + S T++S++
Sbjct: 470 PSSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSSSLSDFLTSSSSL 514
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -1
Query: 279 SITIFSRRTSGASSVPFS--LPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAAS 106
S++ F +S S P S LP S+ L DFLT S SV TSS S T++S
Sbjct: 848 SLSDFLTSSSSLSVFPTSSSLPSDFLTSSSLPSDFLTSSSSLSVFPTSSSLPSDFLTSSS 907
Query: 105 AI 100
++
Sbjct: 908 SL 909
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 222 PLLSAASTFLAGDFLTGDSFGSVEVTSSGATS-FLSTAAS 106
P+ FL DFLT S S +TSS + S FLS ++S
Sbjct: 304 PISEQQGIFLPSDFLTSSSLPSDFLTSSSSLSDFLSLSSS 343
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -1
Query: 267 FSRRTSGASSVPFSLPLLSAASTFLAGDFLTGDSFGSVEVTSSGATSFLSTAASAI 100
F +S S SLP S+ L DFLT S S +TSS + S T++S++
Sbjct: 704 FLTSSSSLSDFLTSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSSSLSDFLTSSSSL 759
>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
Length = 782
Score = 29.1 bits (62), Expect = 4.7
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKK 286
+ + V PE V E +S V+K+P KK ++ E ++ E+ ++K+ K+
Sbjct: 40 EPESVPPESVPHKELGKSKVEKTPEKKKGKEKTEDSEEYYEDTEEIVVVKIKRKKR 95
>SB_44470| Best HMM Match : SNF2_N (HMM E-Value=1.2e-17)
Length = 549
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 500 LEFTHIHISRSYKCITPILIASYYEGLSSFVSDLSLGLYNN 622
+E+ H++ + SYK +TP I + ++S + L LYNN
Sbjct: 129 MEYLHLYNNTSYKALTPPPIGIMWSSVTSTME--YLHLYNN 167
>SB_44281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 351 RFPLHTSLFLFCGITVLRCIVAFFSITIFSRR 256
R + +LF+ C VL C V+ + + +FSRR
Sbjct: 85 RVSISNTLFVVCRSGVLTCRVSTYLLVVFSRR 116
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 128 EVAPEEVTST--EPKESPVKKSPAKKVEAAESNGKENGTDEAPEV 256
EV PEEV + K +PV+ P + E S E E PEV
Sbjct: 725 EVVPEEVEVDVKQTKSTPVESEPTETPEVVPSEKLEGIQAEVPEV 769
>SB_31884| Best HMM Match : Rhabdo_M1 (HMM E-Value=0.36)
Length = 456
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 250 RSSPAENGDAEESNDASENGDATEKKETGVKRKS 351
R +PA E+S+D SEN K+T V+ KS
Sbjct: 247 RQAPATPEQEEDSSDGSENTPLARLKKTKVQSKS 280
>SB_9571| Best HMM Match : Plasmodium_HRP (HMM E-Value=6.2)
Length = 225
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 351 RFPLHTSLFLFCGITVLRCIVAFFSITIFSRR 256
R + +LF+ C VL C V+ + + +FSRR
Sbjct: 18 RVSISNTLFVVCRSGVLTCRVSTYLLVVFSRR 49
>SB_24428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 370 FLHQEPQISSSHQSLSFLWHHRSQMHRCF 284
FL + ISSS + LW +RS+ HR F
Sbjct: 398 FLKESGWISSSRFCVVHLWRNRSERHRFF 426
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,810,573
Number of Sequences: 59808
Number of extensions: 439526
Number of successful extensions: 3866
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3823
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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