Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120483.Seq
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   1.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.6  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 244 SPRSSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 360
           S  SSP   G A     +  NG  T K+E    + +V+L
Sbjct: 524 STSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKSTVSL 562



 Score = 23.0 bits (47), Expect = 3.5
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 134 APEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTD-EAPEVRLLK 268
           +P    ++ P  S     PAK   AA    K NG +    E++ LK
Sbjct: 512 SPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLK 557


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 505  VHSHPHIPLLQMYYTHTDSLIL 570
            VH+ PH P + +  T T+SL +
Sbjct: 1363 VHAPPHSPQITLTATTTNSLTM 1384


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +1

Query: 454 LLNYICLVYCNASMPIRVHSHPHIPLLQMYYTHTDSLI 567
           +  Y C   CN    ++   + H P+ + Y+   DSL+
Sbjct: 242 MARYNCERLCNRLGRVKRFINWHEPIPEAYFPKLDSLV 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,390
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)