Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120483.Seq
(840 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 34 0.10
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 33 0.31
At3g23660.1 68416.m02975 transport protein, putative similar to ... 31 0.72
At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger) fa... 31 1.3
At4g02810.1 68417.m00381 expressed protein 29 2.9
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put... 29 2.9
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 29 3.8
At4g07380.1 68417.m01133 hypothetical protein 29 5.1
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 5.1
At1g51805.1 68414.m05838 leucine-rich repeat protein kinase, put... 29 5.1
At1g01490.1 68414.m00065 heavy-metal-associated domain-containin... 29 5.1
At5g58280.1 68418.m07296 transcriptional factor B3 family protei... 28 6.7
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 28 6.7
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 28 6.7
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 28 6.7
At1g04430.1 68414.m00434 dehydration-responsive protein-related ... 28 6.7
At4g39040.2 68417.m05530 expressed protein contains PF01985: Unc... 28 8.9
At4g39040.1 68417.m05529 expressed protein contains PF01985: Unc... 28 8.9
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 28 8.9
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 28 8.9
At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH) protein-r... 28 8.9
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 253 SSPAENGDAEESNDASENGDATEKKET 333
+S +E+GD+ E+N+ASE+GD E K T
Sbjct: 275 ASESEDGDSVEANNASEDGDTVEDKNT 301
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 250 RSSPAENGDAEESNDASENGDATEKKETGVKRK 348
+S+PA+N D+EE D S+ D E KE VK+K
Sbjct: 251 KSTPAKNSDSEEMFD-SDGEDEEEDKEVAVKKK 282
>At3g23660.1 68416.m02975 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 765
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 339 HTSLFLFCGITVLRCIVAFFSITIFSRRTSGASSVPFSLPLLSA 208
+TS + CG+ C+ FF I+ T GA++ F L L++
Sbjct: 444 NTSAWRLCGLDKTTCLTIFFDISSSGSNTPGAANPQFYLQFLTS 487
>At2g42360.1 68415.m05242 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Frame = +2
Query: 92 LATMADAAVDKKEVAPEEVTSTEPKESPVKKSPA--------KKVEAAESNGKENGTDEA 247
L T + V + EV P EP+E PV +P VEAA S+ +N T +
Sbjct: 140 LTTCSTCPVCRTEVEPRPRLEPEPREGPVGTAPQLLVETRLNLTVEAASSSSSDNKTVVS 199
Query: 248 PEVRL 262
P RL
Sbjct: 200 PASRL 204
>At4g02810.1 68417.m00381 expressed protein
Length = 271
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +2
Query: 173 PVKKSPAKKVE---AAESNGKENGTDEAPEVRLLKMVMLKKATMHLRTVMPQKRKRLV*R 343
P++K K+ ES G ENG+D E+ LL + + T PQK + R
Sbjct: 53 PIEKRSVAKLSLEMCTESLGTENGSDSGDEMSLLALEATNISKSPRLTTKPQKETSFMTR 112
Query: 344 GN 349
N
Sbjct: 113 EN 114
>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 865
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 809 IFVP*INGSYLRPLKKQRYVKQHTTLNLM*SVH 711
I +P IN LRP+KK YV Q +LN + V+
Sbjct: 139 ISIPFINVLELRPMKKNMYVTQGESLNYLFRVY 171
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 29.1 bits (62), Expect = 3.8
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAES-NGKENGTDEAPEVR 259
+A + V P+ + +P+E+ ++ A++ EAAE+ G+E G + E +
Sbjct: 416 EALTVTETVEPQVMEEVQPEETAAPQTEAQQTEAAETQGGQEEGQEREGETQ 467
>At4g07380.1 68417.m01133 hypothetical protein
Length = 168
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEA-PEVRLLKMVMLKK 286
D + + EEV+ E + K K E ++NG++NGT+ PE+ +++ K+
Sbjct: 85 DPSQQSNEEVSQEEVMVNEETKEVDKMEEETQTNGEDNGTEVINPEIADVELPAKKR 141
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLK 268
DKKE EEV S PK KK +K EAA E+ +++ + + K
Sbjct: 504 DKKEEVIEEVAS--PKSEKKKKKKSKDTEAAVDAEDESAAEKSEKKKKKK 551
>At1g51805.1 68414.m05838 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 884
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 806 FVP*INGSYLRPLKKQRYVKQHTTLNLM 723
F+P IN LRPLKK YV + +L L+
Sbjct: 160 FIPFINILELRPLKKNVYVTESGSLKLL 187
>At1g01490.1 68414.m00065 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 177
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 101 MADAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPE 253
M D + PE+ EPK+ + P K+ EA + GK+ G EAP+
Sbjct: 62 MTDIVLVGPAKEPEKEKKEEPKKEGGGEPPKKEGEAPKEEGKKEG--EAPK 110
>At5g58280.1 68418.m07296 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 273
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 253 SSPAENGDAEESNDASENGDATEKKETGVKRKSVAL 360
++P+E + EE D E+GD E KR SV L
Sbjct: 233 TTPSEEEEEEEDKDVEESGD-EEHSSRATKRSSVRL 267
>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
superoxide dismutase, putative similar to Fe-superoxide
dismutase precursor [Medicago sativa]
gi|16974682|gb|AAL32441
Length = 305
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 143 EVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRL 262
E ST ES + ++ ++ E E+ +EN DE PEV L
Sbjct: 257 ETVSTR-LESAIARAVQREQEGTETEDEENPDDEVPEVYL 295
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +2
Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKK 286
D AV V S+ KE ++ +KK+E AE +EN +E + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 287 ATMHLRTVMPQK 322
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = +2
Query: 107 DAAVDKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKK 286
D AV V S+ KE ++ +KK+E AE +EN +E + KK
Sbjct: 7 DVAVVAPVVENGGAESSNGKEEQLESELSKKLEIAEDGQEENDGEEGSKAETSTKKKKKK 66
Query: 287 ATMHLRTVMPQK 322
+ +PQ+
Sbjct: 67 NKSKKKKELPQQ 78
>At1g04430.1 68414.m00434 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 623
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -1
Query: 297 CIVAFFSITIF---SRRTSGASSVPFSLPLLSAASTFLAGDFLTGDS 166
C+VA F +F + GAS++ + L S++L+GD GD+
Sbjct: 19 CVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDDNGDT 65
>At4g39040.2 68417.m05530 expressed protein contains PF01985:
Uncharacterised protein family
Length = 280
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 274 DAEESNDASENGDATEKKETGVKRKS 351
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g39040.1 68417.m05529 expressed protein contains PF01985:
Uncharacterised protein family
Length = 296
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 274 DAEESNDASENGDATEKKETGVKRKS 351
D+E S + SE GD EK E K+KS
Sbjct: 121 DSEASEEVSEIGDKEEKTENTKKKKS 146
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330
+P S A+ D ++ND S+N A E KE
Sbjct: 716 NPGSDEADKTDIPKNNDESDNATAVEAKE 744
>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886
Length = 1285
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 244 SPRSSPAENGDAEESNDASENGDATEKKE 330
+P S A+ D ++ND S+N A E KE
Sbjct: 932 NPGSDEADKTDIHKNNDESDNAAAVEAKE 960
>At2g31280.1 68415.m03819 basic helix-loop-helix (bHLH)
protein-related identical to cDNA bHLH transcription
factor (bHLH gamma gene) GI:32562999; weak similarity to
bHLH transcription activator anthocyanin 1 [Petunia x
hybrida] GI:10998404
Length = 720
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/72 (19%), Positives = 30/72 (41%)
Frame = +2
Query: 119 DKKEVAPEEVTSTEPKESPVKKSPAKKVEAAESNGKENGTDEAPEVRLLKMVMLKKATMH 298
+KK P E + P++ + + K++ NG + D E + M+ L+ T H
Sbjct: 540 NKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIKHMLFLQNVTKH 599
Query: 299 LRTVMPQKRKRL 334
+ +++
Sbjct: 600 AEKLSKSANEKM 611
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,773,804
Number of Sequences: 28952
Number of extensions: 301721
Number of successful extensions: 1046
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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