Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120479.Seq
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778... 58 1e-08
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 52 7e-07
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 48 1e-05
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 48 1e-05
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 43 3e-04
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 40 0.002
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 35 0.091
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 34 0.16
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 33 0.37
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 31 0.85
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 31 0.85
03_04_0017 - 16468486-16468505,16468597-16468807,16469522-164702... 30 2.0
03_06_0246 + 32622793-32622804,32622883-32623057,32623395-326236... 29 3.4
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 28 7.9
>11_04_0388 +
17076157-17076254,17076762-17076813,17077672-17077867,
17078242-17078321,17078465-17078581,17078895-17078950,
17079238-17079268,17079292-17079342,17080411-17080477,
17080621-17080724,17080802-17080909,17081874-17081987
Length = 357
Score = 57.6 bits (133), Expect = 1e-08
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +3
Query: 102 GNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
G E EL+ E YDRQIR+WG+D+QKRL A VL+ G++G E KN
Sbjct: 5 GGAEEELTAQETALYDRQIRVWGVDAQKRLSKAHVLVCGMNGTTTEFCKN 54
Score = 47.6 bits (108), Expect = 1e-05
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Frame = +2
Query: 242 CKKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKI---GVNRAEGSLERARGLNPMVDV 412
CK +L GV S+ L+D+ + + DL + FL P D+ G +RAE E + NPMV V
Sbjct: 52 CKNIVLAGVGSLSLMDDHLVTEDDLNANFLIPHDESIYGGRSRAEVCCESLKDFNPMVRV 111
Query: 413 TSHTKGVDELPD-SFFTEFDVV 475
KG L D F +FD++
Sbjct: 112 AVE-KGDPSLIDGEFLDKFDII 132
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 51.6 bits (118), Expect = 7e-07
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +3
Query: 99 VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
V N E++E + + + RQ+ ++G ++ +RL A+ VL+ GL+GLGAEIAKN
Sbjct: 162 VSGNGSEVAEIDEDLHSRQLAVYGRETMRRLFASNVLVSGLNGLGAEIAKN 212
Score = 38.3 bits (85), Expect = 0.007
Identities = 25/86 (29%), Positives = 41/86 (47%)
Frame = +2
Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
K L GVKS+ L D ++ DL F D IG NRA + + LN V +++ T
Sbjct: 211 KNLALAGVKSITLHDMGNVEMWDLSGNFFLSEDDIGKNRAVACTAKLQELNNAVLISTLT 270
Query: 425 KGVDELPDSFFTEFDVVCATGLKQEQ 502
++L + ++F V T + ++
Sbjct: 271 ---EDLTNEHLSKFQAVVFTDISLDK 293
Score = 37.9 bits (84), Expect = 0.010
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 141 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
+YD QI ++G QK++R A V ++G LG E KN
Sbjct: 573 RYDAQISVFGSKLQKKMRDANVFVVGSGALGCEFLKN 609
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = +3
Query: 126 EAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
E + + + RQ+ ++G ++ KRL A+ VL+ GL+GLGAEIAKN
Sbjct: 78 EIDEDLHSRQLAVYGRETMKRLFASNVLVSGLNGLGAEIAKN 119
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
K +L GVKSV L D++ ++ DL S F +G NRA+ +++ + LN V +++ T
Sbjct: 118 KNLVLAGVKSVTLHDDDNVELWDLSSNFFLTEKDVGQNRAQTCVQKLQELNNAVIISTIT 177
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 132 EAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
E +YD QI ++G + QK+L AK+ ++G LG E KN
Sbjct: 445 ENTRYDAQISVFGSNLQKKLEQAKIFMVGSGALGCEFLKN 484
>11_01_0039 -
290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 47.6 bits (108), Expect = 1e-05
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = +3
Query: 126 EAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
E + + + RQ+ ++G ++ KRL A+ VL+ GL+GLGAEIAKN
Sbjct: 155 EIDEDLHSRQLAVYGRETMKRLFASNVLVSGLNGLGAEIAKN 196
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +2
Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
K +L GVKSV L D++ ++ DL S F +G NRA+ +++ + LN V +++ T
Sbjct: 195 KNLVLAGVKSVNLHDDDNVELWDLSSNFFLTEKDVGQNRAQTCVQKLQELNNAVIISTIT 254
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 132 EAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
E +YD QI ++G + QK+L AK+ ++G LG E KN
Sbjct: 569 ENTRYDAQISVFGSNLQKKLEQAKIFMVGSGALGCEFLKN 608
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = +3
Query: 108 NEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
N V + E + + + RQ+ ++G ++ +RL A+ VL+ GL+GLGAEI +
Sbjct: 44 NGVVVPEIDEDLHSRQLAVYGRETMRRLFASHVLVSGLNGLGAEIGSS 91
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = +2
Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
K L GVKSV L D + ++ DL + F + IG NRA + + + LN V V++ T
Sbjct: 117 KNLALAGVKSVTLHDVKNVEMWDLSANFFLSENDIGKNRAAACVSKLQELNNAVLVSALT 176
Query: 425 KGVDELPDSFFTEFDVVCATGL 490
+EL ++F V T +
Sbjct: 177 ---EELTTDHLSKFQAVVFTDI 195
Score = 35.5 bits (78), Expect = 0.052
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 141 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
+YD QI ++G QK+L A ++G LG E KN
Sbjct: 479 RYDAQISVFGSKLQKKLEEANTFVVGSGALGCEFLKN 515
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/51 (33%), Positives = 34/51 (66%)
Frame = +3
Query: 93 KMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIA 245
++V +++ E +EQ R I+ +G++SQK++ + V++IGL G+G+ A
Sbjct: 61 RVVATSDLLDDEVVSEQLTRNIQFFGMESQKKVTGSFVVVIGLGGVGSHAA 111
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 34.7 bits (76), Expect = 0.091
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 141 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
+YDRQ+R+WG Q L A + ++ G E KN
Sbjct: 15 KYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMKN 51
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
K L+G + + ++D + ++ +L QFL +G ++A + + P +++TS+
Sbjct: 34 KTLALSGFRDIHIIDLDTIEVSNLNRQFLFRQSHVGQSKAHVARDAVLKFRPNINITSYH 93
Query: 425 KGVDELPDS--FFTEFDVV 475
V + + FF +F+VV
Sbjct: 94 ANVKDAQFNVEFFKQFNVV 112
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +3
Query: 180 QKRLRAAKVLIIGLSGLGAEIAK 248
++ ++AAKVL++G G+G E+ K
Sbjct: 12 EEAVKAAKVLMVGAGGIGCELLK 34
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 32.7 bits (71), Expect = 0.37
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 513 QQCLSRQNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQHKAT 638
+ CL++++ +++ DV GTYG +FS +++ Y + I T
Sbjct: 183 KSCLAKESGEYVPYDVNGTYGQLFS-IIEERYKDNIESRSLT 223
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +3
Query: 141 QYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIA 245
+Y R + L +GL+ Q++L + +L++G GLG+ +A
Sbjct: 76 RYRRHLLLPQFGLEGQRKLSQSSILVVGAGGLGSPVA 112
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 31.5 bits (68), Expect = 0.85
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 573 GYMFSDLVDHEYSEEIVQHKATKRGPDDEEKNARETVSITVKRR 704
G F +L+ H + V K+G DDEEK + T +I+V R+
Sbjct: 538 GVFFLELL-HAVNHRHVDLSMVKKGEDDEEKKSNATYTISVARK 580
>03_04_0017 -
16468486-16468505,16468597-16468807,16469522-16470214,
16470338-16470398,16470624-16470706
Length = 355
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 116 RTF*GRSRTVRPTNSPVGLRLAEETTCSESINHRLVRTRR*NC 244
RT G+ RP+NSP E + +HRL R RR C
Sbjct: 282 RTVLGKKIAARPSNSPASRTYFLEGNNAHGDDHRLCRRRRPRC 324
>03_06_0246 +
32622793-32622804,32622883-32623057,32623395-32623659,
32624594-32624693,32625076-32625125,32625239-32625293,
32625742-32625774
Length = 229
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 369 PSARFTPILSGGHRNWEYRSIC 304
P +F I +GGH WE+RSIC
Sbjct: 182 PKPKF--IFNGGHELWEWRSIC 201
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +3
Query: 546 ICGDVWGTYGYMFSDLVDHEYSEEIVQHKATKRGPDDEEKNARETVSITVKRRAIYV 716
+C + + +FS ++ + Y +E+V A R +++E NA E+ + VK+ ++
Sbjct: 687 MCQENTKEFSPLFSKILPYLYDKEVVSEDAILRWAEEKE-NADESDKVFVKQSEAFI 742
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,278,776
Number of Sequences: 37544
Number of extensions: 390080
Number of successful extensions: 1022
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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