Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120479.Seq
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   6e-12
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                  48   1e-05
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         38   0.010
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.38 
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.66 
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   30   2.6  
SB_19753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_4056| Best HMM Match : PSP1 (HMM E-Value=0.79)                      29   3.5  
SB_38023| Best HMM Match : YL1 (HMM E-Value=8.3)                       29   6.1  

>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 32/73 (43%), Positives = 44/73 (60%)
 Frame = +2

Query: 281 LLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFT 460
           +LDN  + + D  SQFL P + +G NRAE SL R + LNPMV V++    +    D+F  
Sbjct: 1   MLDNNPVTERDFVSQFLAPREALGKNRAEASLARTQALNPMVAVSADKNNITAKADTFLD 60

Query: 461 EFDVVCATGLKQE 499
           +FDVV ATG   +
Sbjct: 61  DFDVVVATGCSSD 73



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
 Frame = +3

Query: 510 NQQCLSRQNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQ--HKATKRGPDDEEKNAR--E 677
           +++C ++ N KF   DV+G YGYMF+DL    Y EE  +  H A K+  +  +K  +   
Sbjct: 79  DERCRAK-NIKFFASDVFGFYGYMFADLGKDRYVEEERKTIHSAEKKEKEPAKKKQKIDS 137

Query: 678 TVSITVKRRAIYVPLQNALSADWN 749
           T + TV++   +  L+N+LS  ++
Sbjct: 138 TETKTVEKFCEFSSLKNSLSCSFS 161


>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 32/86 (37%), Positives = 44/86 (51%)
 Frame = +2

Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
           K  +L GVKSV L D   ++  DL SQF      +G NRAE S  R   LN  V ++ +T
Sbjct: 94  KNVVLGGVKSVTLHDTGAVELSDLTSQFFLNKKDVGKNRAEVSHPRIAELNTYVSMSVNT 153

Query: 425 KGVDELPDSFFTEFDVVCATGLKQEQ 502
           +   +L + F  +F VV  T    E+
Sbjct: 154 Q---KLTEEFINKFQVVVLTESSLEE 176



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +3

Query: 90  QKMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
           Q +    + E  + +   Y RQ+ + G ++ K++  + VLI GL GLG EIAKN
Sbjct: 42  QSVRDEGQAEKMDIDEGLYSRQLYVLGHEAMKKMAVSNVLISGLRGLGVEIAKN 95



 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 141 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
           +YD QI ++G + QK+L   K  ++G   +G E  KN
Sbjct: 324 RYDGQIAVFGSEFQKKLGQQKYFVVGAGAIGCEHLKN 360


>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +2

Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKI--GVNRAEGSLERARGLNPMVDVTS 418
           K   L G+KS+ L D       DL SQF    D +    NRA  S  R   LNP V V +
Sbjct: 46  KNLTLAGIKSITLHDTRAASMADLGSQFFLREDDVTSSRNRAVASAGRVAELNPYVSVHT 105

Query: 419 HTKGVDE 439
            T  +DE
Sbjct: 106 QTDALDE 112



 Score = 34.7 bits (76), Expect = 0.093
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 108 NEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
           N+VE+ ++    Y RQ  + G  + +++  A V + G+ GLG EIAKN
Sbjct: 3   NKVEIDDS---LYSRQRYMLGDQAMQKMAHASVFLSGVGGLGVEIAKN 47


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +2

Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
           K  +LTG K++ L+D + +   +L  QFL     +G ++A+ + E A   NP   + +  
Sbjct: 40  KNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKAKVARESALRFNPDAKIVAIH 99

Query: 425 KGV--DELPDSFFTEFDVV 475
             +   E    +F +FDVV
Sbjct: 100 DNITSPEYGIDYFKQFDVV 118


>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +2

Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
           K  +LTG K++ L+D + +   +L  QFL     +G ++A+ + E A   NP   + +  
Sbjct: 40  KNLVLTGFKNIDLIDLDTIDVSNLNRQFLFHKQHVGKSKAKVARESALRFNPDAKIVAIH 99

Query: 425 KGV--DELPDSFFTEFDVV 475
             +   E    +F +FDVV
Sbjct: 100 DNITSPEYGIDYFKQFDVV 118


>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +3

Query: 120 LSEAEAEQYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIA 245
           L+ +E  +Y RQ+ L   G+  Q+ L+++ VL++G  GLG   A
Sbjct: 52  LTNSEISRYSRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAA 95


>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +3

Query: 477 VQQVSNKSNSKNQQCLSRQNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQHKATKRGPDD 656
           + ++  K NS N++ LS  NKK      W  +G MF  L D +  + I+Q     +G + 
Sbjct: 1   IVELDRKRNS-NREALSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFNL 59

Query: 657 EEKNARETVSITV 695
           +     E  S TV
Sbjct: 60  KPVTEDELHSATV 72


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 718  GTYIARRFTVIETVSRAFFSSSSGPRLVALC 626
            G  + R++  +ET  RA F S SGP +  LC
Sbjct: 942  GFQVTRQYGGLETAFRAEFGSGSGPTVAFLC 972


>SB_19753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +3

Query: 570 YGYMFSDLVDHEYSEEIVQHKATKRGPDDEEKNARETVSITVKRRAIYVPLQNALSADWN 749
           + + F + +  E+  E+  H A K+ P  ++        + V R   + PL+NA  +   
Sbjct: 250 FTFKFLEAICREHENELPFHIAKKKIPHVDDSGKINLAVLEVLREDEFSPLKNAPGSAKE 309

Query: 750 SPE 758
           SPE
Sbjct: 310 SPE 312


>SB_4056| Best HMM Match : PSP1 (HMM E-Value=0.79)
          Length = 176

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +3

Query: 531 QNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQHKATKRGPDDEEKNARETVSITVKRRAI 710
           QN K     VW T   + +   + +    +V++ A KRG D+E    +++V  + K R  
Sbjct: 20  QNPKRFFTLVWDTKIEILNVTFERDREAIVVEYVAAKRGSDEEPSERKDSV-FSEKFRES 78

Query: 711 YVPLQNALSA 740
             PL+  + A
Sbjct: 79  LAPLRMTVMA 88


>SB_38023| Best HMM Match : YL1 (HMM E-Value=8.3)
          Length = 346

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +3

Query: 531 QNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQHKATKRGPDDEEKNARETVSITVKRRAI 710
           QN K     VW T   + +   + +    +V++ A KRG D+E    +++V  + K R  
Sbjct: 167 QNPKRFFTLVWDTKIEILNVTFERDREAIVVEYVAAKRGSDEEPSERKDSV-FSEKFRES 225

Query: 711 YVPLQNALSA 740
             PL+  + A
Sbjct: 226 LPPLRMTVMA 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,329,171
Number of Sequences: 59808
Number of extensions: 483344
Number of successful extensions: 2112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2108
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)