Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120479.Seq
(830 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical pr... 61 8e-10
U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula (ubiq... 46 3e-05
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p... 45 6e-05
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p... 45 6e-05
AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical ... 36 0.036
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 29 3.1
U97012-7|AAK39139.2| 387|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z72503-9|CAA96599.2| 370|Caenorhabditis elegans Hypothetical pr... 28 9.4
AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical ... 28 9.4
>Z72502-6|CAA96591.1| 343|Caenorhabditis elegans Hypothetical
protein C08B6.9 protein.
Length = 343
Score = 61.3 bits (142), Expect = 8e-10
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 9/203 (4%)
Frame = +3
Query: 114 VELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNXXXXXXXXXXXXTM 293
+E+S+AE YDRQIRLWG+++Q ++R +KVLIIG LGAE+AK
Sbjct: 1 MEVSKAEQAIYDRQIRLWGMEAQNKIRNSKVLIIGGKQLGAEVAKTLSLAGVDEMHLVDH 60
Query: 294 RN*NKSICTPNFCVLLTRSA*IEQRVRWK-------ELEA*IR-WSMSQVILRA*MSYLT 449
R + NF L S + +W L ++ + + + +L S +
Sbjct: 61 RLVDTEEIGMNF--LYDASVDNSKMTKWAASYNFLYNLNRNVKLFIVEEDVLSKNDSEIE 118
Query: 450 ASSRNLT-SYVQQVSNKSNSKNQQCLSRQNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQ 626
T V S + +K + + +FI G ++G GY F D H Y +V+
Sbjct: 119 EYLTKFTLVVVLDESYERTAKVNNICRKHHIRFISGAIYGWIGYAFFDFDGHAY---LVK 175
Query: 627 HKATKRGPDDEEKNARETVSITV 695
K+ ++E + + + +TV
Sbjct: 176 AKSPDCLNEEESETGKTSTVVTV 198
>U13875-1|AAA21162.2| 541|Caenorhabditis elegans Yeast ula
(ubiquitin activating)homolog protein 1 protein.
Length = 541
Score = 46.4 bits (105), Expect = 3e-05
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = +2
Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
K +L GV+S ++D+ K++Q D+ F D IG +RAE +LE+ LNP V ++ +
Sbjct: 44 KSLVLAGVQSFYVVDDAKVEQADIGQNFFLHADDIGRSRAEATLEKLTELNPSVSGSASS 103
Query: 425 KGVDEL---PDSFFTEFDVVCATGLKQE 499
+ L T F VV A +E
Sbjct: 104 QPPTALAMEDVEKLTTFSVVVAANQNEE 131
Score = 37.1 bits (82), Expect = 0.015
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 141 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
+YDRQ+RLWG + Q + + ++G L EI K+
Sbjct: 9 RYDRQVRLWGEEGQASIGSTSACVLGSDSLATEILKS 45
>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
protein C47E12.5b protein.
Length = 1028
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/80 (37%), Positives = 39/80 (48%)
Frame = +2
Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
K IL GV+ V + D + K DL +Q+ +G NRA ER LN V+V T
Sbjct: 57 KNLILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST 116
Query: 425 KGVDELPDSFFTEFDVVCAT 484
DEL + F FD+V T
Sbjct: 117 ---DELTEEFVKTFDLVVLT 133
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/51 (47%), Positives = 27/51 (52%)
Frame = +3
Query: 99 VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
VG N EL + Y RQI G + LR A VLI GL +G EIAKN
Sbjct: 10 VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKN 58
>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
protein C47E12.5a protein.
Length = 1113
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/80 (37%), Positives = 39/80 (48%)
Frame = +2
Query: 245 KKRILTGVKSVCLLDNEKLKQIDLYSQFLCPPDKIGVNRAEGSLERARGLNPMVDVTSHT 424
K IL GV+ V + D + K DL +Q+ +G NRA ER LN V+V T
Sbjct: 142 KNLILGGVRHVTIHDTKLAKWSDLSAQYYLRDADVGHNRATSCYERLAELNDSVNVQVST 201
Query: 425 KGVDELPDSFFTEFDVVCAT 484
DEL + F FD+V T
Sbjct: 202 ---DELTEEFVKTFDLVVLT 218
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/51 (47%), Positives = 27/51 (52%)
Frame = +3
Query: 99 VGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
VG N EL + Y RQI G + LR A VLI GL +G EIAKN
Sbjct: 95 VGGNSDELLDKNL--YSRQIYTLGESAMVNLRTASVLISGLGSVGVEIAKN 143
>AF038618-6|AAB92067.2| 402|Caenorhabditis elegans Hypothetical
protein F42G8.6 protein.
Length = 402
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 120 LSEAEAEQYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIA 245
+S+ +A +Y RQ+ + +G+ QK L+ VLI+G GLG +A
Sbjct: 10 ISKKDAGRYSRQLLVDDFGVSGQKNLKNLNVLIVGAGGLGCPVA 53
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 168 GLDSQKRLRAAKVLIIGLSGLGAEIAKN 251
G ++ + L+ K+L+IG GLG E+ KN
Sbjct: 33 GPENFEALQNTKILVIGAGGLGCELLKN 60
>U97012-7|AAK39139.2| 387|Caenorhabditis elegans Hypothetical
protein C04E6.4 protein.
Length = 387
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 721 SGTYIARRFTVIETVSRAFF--SSSSGPRLVALCCTISSEYS*STRSENM*PYVPQTSPQ 548
S Y R + +V F + +S L + CT+ + Y + RS NM YVPQ S
Sbjct: 97 STVYTISRDKCVGSVKTETFDQAGNSNLGLKNIKCTLDALYKNAMRSSNMLQYVPQKSHN 156
Query: 547 I 545
+
Sbjct: 157 V 157
>Z82062-5|CAB54319.4| 582|Caenorhabditis elegans Hypothetical
protein W02A11.4 protein.
Length = 582
Score = 27.9 bits (59), Expect = 9.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 174 DSQKRLRAAKVLIIGLSGLGAEIAKN 251
+ +++ +K+L+IG G+G E+ KN
Sbjct: 6 EKHEKIVQSKILVIGAGGIGCELLKN 31
>Z72503-9|CAA96599.2| 370|Caenorhabditis elegans Hypothetical
protein C26C6.7 protein.
Length = 370
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 484 RSQTRAIRRINNACRDRTKSLSAATSGVRTVTCSLI*LITSTPRRLYNTKPPNV 645
R A RR +N ++ S T+ + +TC+ I L+ + R++Y TK P V
Sbjct: 165 RQNVIAQRRQSNVQLVQSMSGRTTTTTLIPLTCAQIHLVRALWRQVYTTKGPTV 218
>AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical
protein Y106G6G.2 protein.
Length = 821
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 439 LIYALSMTCDIDHRI-QASSSFQRTLCSIYADLVRRTQKL 323
+I A T ID I Q SS+F CS++AD + K+
Sbjct: 509 IIAAPKNTLSIDEAILQFSSNFYENFCSVHADAYKSRSKI 548
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,169,316
Number of Sequences: 27780
Number of extensions: 369780
Number of successful extensions: 1049
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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