Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120479.Seq
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.86 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.5  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    24   2.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 471 SYVQQVSNKSNSKNQQCLSRQNKK 542
           +Y    SN SNS N   L +QNK+
Sbjct: 141 NYFYSKSNGSNSSNSDVLFKQNKE 164


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 399 RWSMSQVILRA*MSYLTASSRNLTSYVQQVSNKSNSKNQQCLSRQNKK 542
           R+S S V  R+  S  + S   LTS   Q  NK  SKN    ++  +K
Sbjct: 27  RFSSSIVDRRSPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEK 74


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 266 VKSVCLLDNEKLKQI 310
           VKSVC LD  KL Q+
Sbjct: 81  VKSVCTLDGNKLIQV 95


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 396 FKPRALSNEPSARFTPILSGGHRNWEYR 313
           F+PRA  +    R+    S  + NWE++
Sbjct: 166 FEPRATDSRHYDRYKEEESNENYNWEHK 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,476
Number of Sequences: 438
Number of extensions: 4403
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)