Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120477.Seq
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.39 
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    28   0.52 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   0.69 
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   2.8  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    26   2.8  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    25   4.8  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   6.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   6.4  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   6.4  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   6.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    24   8.5  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 61  CHIWFDTPAPFFSRYHTQTQ 120
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 28.3 bits (60), Expect = 0.52
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +1

Query: 136 TPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAR-NEAISSPALVWLSTVTKS 312
           +PP   S   K QE  +   P +  T  L+++ S+   +   NE ++SP     +++T S
Sbjct: 122 SPPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAASLTSS 181

Query: 313 CLQDFK 330
            L+DF+
Sbjct: 182 PLKDFQ 187


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 0.69
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 157 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 243
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = -1

Query: 389 KVIYLQNSNKNKLFELSGL-----SLKSCRHD--FVTVESQTRAGDEIASFLATVGCVEC 231
           +V+YL ++NK + FELS +        + +H   F+  +  T   +E  +    +    C
Sbjct: 379 RVLYLFHANKQRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSC 438

Query: 230 LAVNSSVFCNF 198
           L +   +F N+
Sbjct: 439 LQLMMDIFGNY 449


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 311 DFVTVESQTRAGDEIASFLATVGCVECLAVNSSVFCNFG 195
           D  ++ES   A  E+      V  V+ L VNS+VF +FG
Sbjct: 62  DVSSLESANEAAQEVTK---VVDAVDVLWVNSAVFHSFG 97


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 313 TIL*QSKAKRGQATKSLRSLLLSDVWNVWLL 221
           TIL   +   G  T +L+S+L +DVW  +L+
Sbjct: 240 TILHVEQEMTGDDTPALQSVLDADVWRKYLI 270


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 100 RYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKP 195
           +Y T T K  L TPP    HI      F   P
Sbjct: 382 QYDTSTSKAELSTPPSKRRHIDDADLVFHSSP 413


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 157 HIQKIQEPFIDKPPKLQNTLLLTARHSTHP 246
           H QK + P     P++QNT      H THP
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHP 302


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 233 CLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGV 135
           CLA +  +F       + GSWIF   ++ PGG+
Sbjct: 354 CLASSREIFAFARDKGLPGSWIF--RKLTPGGI 384


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 106 HTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTV 252
           H     + ++   G   H+ KI  P + +PP   + L +     THPT+
Sbjct: 578 HLSAYAISIRMKDGQIRHLAKIISPCVLRPP---DDLNIIPVEDTHPTL 623


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 362 KNKLFELSGLSLKSCRHDFVTVESQTRAGDEIASF 258
           KNKL + S + L SC    +   S TR   + +S+
Sbjct: 78  KNKLSKESAIQLSSCIRKTLLAPSSTRVPSKNSSY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,862
Number of Sequences: 5004
Number of extensions: 28007
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)