Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120477.Seq
(422 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0) 31 0.30
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 1.2
SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32) 28 3.7
SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22) 27 6.4
SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23) 27 8.5
SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 8.5
>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1737
Score = 31.5 bits (68), Expect = 0.30
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Frame = +1
Query: 85 APFFSRYHTQTQKLGLQTP-----PG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPT 249
+P++ RY T T L LQTP P T + P+ P LL T+ + HP
Sbjct: 1632 SPYY-RYPTITDTLLLQTPSYYRHPAITDTLLLQTSPYYRHPAITDTLLLQTSPYYRHPA 1690
Query: 250 VARNEAISSPALVWLSTVTKSCLQD 324
+ + +P + SC D
Sbjct: 1691 ITDTLLLQTPCYYRHPAIQTSCCTD 1715
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -1
Query: 293 SQTRAGDEIASFLA-TVGCVECLAVNSSVFC-NF 198
S+ AG SFL T CV+C+ VNS+ C NF
Sbjct: 599 SELHAGSTKVSFLLKTSSCVKCVGVNSTFHCVNF 632
>SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1415
Score = 28.3 bits (60), Expect = 2.8
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = -3
Query: 312 RFCNSRKPNEGRRRNRFVPCYCRMC 238
++ + G+++ + PCYCR+C
Sbjct: 330 KYTRKTEDQTGKQQKSYCPCYCRIC 354
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 102 VSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSKERSDF 272
+ A+ EA VTD R D EDP V E+T+ H D +++ D+
Sbjct: 776 IHRAEFEALVTDTTRSDALDIEDPDDV----KEITKFLHERGIVMHYDDPNQDLQDY 828
>SB_27488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -1
Query: 359 NKLFELSGLSLKSCRHDFVTVESQTRAGDEIASFLAT--VGC-VECLAVNSSVFCNFGGL 189
N +F+LS S +F+ + + G + F + C +C VNS V NFG
Sbjct: 114 NHIFDLSSASFTY--FNFMDIPAHALVGYVVEVFNTSDSFSCQAKCFDVNSCVSVNFGRR 171
Query: 188 SMNGSWIFC 162
S N S C
Sbjct: 172 SANDSQFTC 180
>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
Length = 1168
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 109 TQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVARN 261
T TQ Q+P +H + +P PPK Q+ T+ H+T T ++
Sbjct: 718 TTTQHFYNQSPLHHQNHNTTLLQPVTITPPKPQHNTSTTSHHNTTKTTTQS 768
>SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 253 ARNEAISSPALVWLSTVTKSC 315
A+N+A S P ++WLS V ++C
Sbjct: 105 AQNDAQSFPLILWLSVVRQNC 125
>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 298 SKAKRGQATKSLRSLLLSDVWNVWLLIVACSV 203
SK K GQA+ L+ +++SDV +L I A V
Sbjct: 509 SKGKLGQASHLLKQMVVSDVMEEFLTIPAYEV 540
>SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)
Length = 699
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 98 LKNGAGVSNHMWHRLKNDDGDDKPCLNCVIYV 3
+ NG ++NH + G +K C+N V YV
Sbjct: 63 MNNGRRIANHDMQGISFASGGEKDCVNMVGYV 94
>SB_36995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 327 KILQTRFCNSRKPNEGRRRNRFVPCYCRMCGMSGC 223
K ++ R C+ KP G + + RMC M C
Sbjct: 287 KQMRKRVCDDPKPRNGGKTCKGADTQVRMCNMQPC 321
>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
Length = 1531
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 101 RLKNGAGVSNHMWHRLKNDDGDD 33
+LK+GA ++H WH + GDD
Sbjct: 377 KLKDGAKTTDHNWHVHEKPVGDD 399
>SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 355
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 214 LLLTARHSTHPTVARNEAISSPALVWLSTVTKSCLQ 321
L +TA +S H + AI VWL +T SCL+
Sbjct: 123 LAITAPYSYHELMTPVRAILVICGVWLYAITVSCLR 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,801,249
Number of Sequences: 59808
Number of extensions: 226147
Number of successful extensions: 682
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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