Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120475.Seq
(862 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000383643 Cluster: COG3948: Phage-related baseplate... 37 0.75
UniRef50_Q4DRX9 Cluster: Putative uncharacterized protein; n=1; ... 36 1.3
UniRef50_UPI0000EBE39A Cluster: PREDICTED: similar to tripartite... 35 2.3
UniRef50_Q0B4G8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_A0T847 Cluster: Putative uncharacterized protein; n=1; ... 34 4.0
UniRef50_Q019K2 Cluster: Chromosome 05 contig 1, DNA sequence; n... 34 4.0
UniRef50_A0TRJ4 Cluster: Putative uncharacterized protein; n=2; ... 34 5.3
UniRef50_A1ZWP5 Cluster: BNR/Asp-box repeat domain protein; n=1;... 33 7.0
UniRef50_Q4U9P2 Cluster: 26S proteasome regulatory subunit, puta... 33 7.0
UniRef50_A5DT62 Cluster: Putative uncharacterized protein; n=1; ... 33 7.0
UniRef50_Q640I9 Cluster: JmjC domain-containing histone demethyl... 33 7.0
UniRef50_A1FSF5 Cluster: Transcriptional regulator, GntR family;... 33 9.3
>UniRef50_UPI0000383643 Cluster: COG3948: Phage-related baseplate
assembly protein; n=1; Magnetospirillum magnetotacticum
MS-1|Rep: COG3948: Phage-related baseplate assembly
protein - Magnetospirillum magnetotacticum MS-1
Length = 260
Score = 36.7 bits (81), Expect = 0.75
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 8 DRDQRADLPERFAKER--IQQNSHERHDAARPHRSAGRQLTPRRRPLKARVCRSDRTTLR 181
+R RA + ER A+ER Q+ H RHD R R A R+ P+ RV +
Sbjct: 7 ERGDRAPVRERDARERRDAQRARHARHDVDRQARRAAREYLLAAAPVDERVAALEPHDAP 66
Query: 182 CALRGVGHLTGLFSVSHVRHSV 247
ALR V H G+ V +RH V
Sbjct: 67 AALR-VLHEEGVDLV--LRHGV 85
>UniRef50_Q4DRX9 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma cruzi|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 1268
Score = 35.9 bits (79), Expect = 1.3
Identities = 34/97 (35%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = -1
Query: 364 RGPKSPHVTSRD-NQVTNHSLLRNAKTFIRRLERTVLQTRYAVSHMADGKQTG*VSDTAQ 188
RGP SR Q T HSL AK ++ RL+ + L+ ADGK T S TA
Sbjct: 1041 RGPTPTFEASRCIPQSTLHSLENFAKAYMPRLDTSGLRETERQGEAADGKDTQGGSSTAH 1100
Query: 187 RTPQRCAIRSTDPSFKRAAARRQLPAGRTVRARGIVP 77
+P S + AAA R A +RG VP
Sbjct: 1101 LSPTTVKHVSLLEAAASAAASRS--ASGFGESRGAVP 1135
>UniRef50_UPI0000EBE39A Cluster: PREDICTED: similar to tripartite
motif protein TRIM4 isoform beta isoform 1, partial;
n=1; Bos taurus|Rep: PREDICTED: similar to tripartite
motif protein TRIM4 isoform beta isoform 1, partial -
Bos taurus
Length = 280
Score = 35.1 bits (77), Expect = 2.3
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -2
Query: 285 LSVDWNAQYCKRVTLCLTWLTENRPVKCPTPRNAHRSVVRSDRQTLAL---RGRRRGVSC 115
+S++ +C R LC TW PV+CP R LA R RRR +
Sbjct: 23 VSIECGHNFC-RGCLCRTWAPGGSPVRCPECRRPSAPASMRPNWALARLTERMRRRRLGP 81
Query: 114 RPAERCGR 91
PA CGR
Sbjct: 82 VPAGLCGR 89
>UniRef50_Q0B4G8 Cluster: Putative uncharacterized protein; n=1;
Burkholderia ambifaria AMMD|Rep: Putative
uncharacterized protein - Burkholderia cepacia (strain
ATCC 53795 / AMMD)
Length = 192
Score = 34.3 bits (75), Expect = 4.0
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Frame = -2
Query: 258 CKRVTLCLTWLTEN---RPVKCPTPRNAHRS-VVRSDRQTLALRGRRRGVSCRPAERCGR 91
C+R C + T R KCPT R + R R+ R R+ CR +C R
Sbjct: 32 CRRYPRCRKYPTYRKCPRYRKCPTYRKCRKCRKCRKCRKCRKCRKCRKCRKCRKCRKCRR 91
Query: 90 AASCRSCEFC 61
CR C C
Sbjct: 92 CRRCRKCLSC 101
>UniRef50_A0T847 Cluster: Putative uncharacterized protein; n=1;
Burkholderia ambifaria MC40-6|Rep: Putative
uncharacterized protein - Burkholderia ambifaria MC40-6
Length = 735
Score = 34.3 bits (75), Expect = 4.0
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = -2
Query: 321 LRITVYYGMLRLLSVDWNAQYCKRVTLCLTWLTENRPVKCPTPRNAH--RSVVRS-DRQT 151
LR +V++G+ L S ++ C C T P R+A R+ R+ DR +
Sbjct: 631 LRFSVFHGVSCLRSNRYDVAECAERAFCPARFTHALPAASRRSRSARVRRAASRTGDRPS 690
Query: 150 LALRGRRRGVSCRPAERCGRAASCRS 73
R R CR GRAA C S
Sbjct: 691 APSRTRDGTCRCRAGSISGRAAGCAS 716
>UniRef50_Q019K2 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 289
Score = 34.3 bits (75), Expect = 4.0
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = +2
Query: 11 RDQRADLPERFAKERIQQNSHERHDAARPHRSAGRQLTPRRRPLKARVCRSDRTTLRCAL 190
R R LP A R + + RH AR R + R+ + RRRP + V RS T CAL
Sbjct: 201 RSTRIKLPNPRACRRARARAVARHRVARCRRRSRRRRS-RRRPSRRGVARSGGGTHECAL 259
>UniRef50_A0TRJ4 Cluster: Putative uncharacterized protein; n=2;
Burkholderia cepacia complex|Rep: Putative
uncharacterized protein - Burkholderia cenocepacia MC0-3
Length = 764
Score = 33.9 bits (74), Expect = 5.3
Identities = 29/96 (30%), Positives = 39/96 (40%)
Frame = -1
Query: 364 RGPKSPHVTSRDNQVTNHSLLRNAKTFIRRLERTVLQTRYAVSHMADGKQTG*VSDTAQR 185
R P +P R V L R + RR+ + + R+ + G R
Sbjct: 82 RRPHAPRCVLRRRYVVGARLDRRGREPARRV--SARRGRHRARAGRPRRTRGPDLPADGR 139
Query: 184 TPQRCAIRSTDPSFKRAAARRQLPAGRTVRARGIVP 77
P R A R+ P+ RAA RR R VRARG +P
Sbjct: 140 QPARRARRAAGPADPRAAGRRDRLPARRVRARGRLP 175
>UniRef50_A1ZWP5 Cluster: BNR/Asp-box repeat domain protein; n=1;
Microscilla marina ATCC 23134|Rep: BNR/Asp-box repeat
domain protein - Microscilla marina ATCC 23134
Length = 1380
Score = 33.5 bits (73), Expect = 7.0
Identities = 25/67 (37%), Positives = 33/67 (49%)
Frame = -3
Query: 614 AYQYLVCNNGKTEAPLTKTNKRFVLS*ELPDRQQSNGPSSHRRSRPANFNIDKTKFTFSS 435
AY+ LV +NG T A ++T + V S LP Q+SNG S AN+ K+ S
Sbjct: 1128 AYKVLVTSNGITVA--SQTIQVLVKSSPLPVIQESNGALSTAEIAGANYQWFKSGAAISG 1185
Query: 434 PLNHMYT 414
N YT
Sbjct: 1186 ATNSTYT 1192
>UniRef50_Q4U9P2 Cluster: 26S proteasome regulatory subunit,
putative; n=2; Theileria|Rep: 26S proteasome regulatory
subunit, putative - Theileria annulata
Length = 1041
Score = 33.5 bits (73), Expect = 7.0
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 164 DRTTLRCA-LRGVGHLTGLFSVSHVRHSVTRLQYCAFQSTDKSLSIP**TVIRNLVVAGR 340
D TTL L + HL+ +SV+H+ +SVT L Y S KSL + ++ N V G
Sbjct: 144 DSTTLGIIILTLITHLS--YSVTHLSYSVTHLSYSVTHSYSKSLELLVINMMYNSVSCGE 201
Query: 341 NVRTLG 358
+ +G
Sbjct: 202 EYQAMG 207
>UniRef50_A5DT62 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 1068
Score = 33.5 bits (73), Expect = 7.0
Identities = 25/95 (26%), Positives = 46/95 (48%)
Frame = -3
Query: 557 NKRFVLS*ELPDRQQSNGPSSHRRSRPANFNIDKTKFTFSSPLNHMYTR*ITFKTTPIGL 378
N++ S LP Q+ G S++ SRPAN + + ++ S P +H Y++ L
Sbjct: 797 NQKNKTSNVLPQTGQNMGSSNYNLSRPANAH-QQQLYSQSQPKSHPYSQ----------L 845
Query: 377 RKRRPRPQESARYVPRQPGYESQSTTEC*DFYPSI 273
+ ++ +PQ + PRQ + Q T ++ S+
Sbjct: 846 QSQQQQPQSQPQSQPRQMQMQMQGNTNYRPYHSSL 880
>UniRef50_Q640I9 Cluster: JmjC domain-containing histone
demethylation protein 1B; n=5; Xenopus|Rep: JmjC
domain-containing histone demethylation protein 1B -
Xenopus laevis (African clawed frog)
Length = 1259
Score = 33.5 bits (73), Expect = 7.0
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = -2
Query: 225 TENRPVKCPTPRNAHRSVVRSDRQTLALRGRRRGVSCRPAERCGRAASCRSCEFC 61
++NR V P + A V+ + RRR CR E C R C C FC
Sbjct: 538 SKNRAVGRPKGKIASSPAVKLSANRTSAGARRRRTRCRKCEACLR-TECGECHFC 591
>UniRef50_A1FSF5 Cluster: Transcriptional regulator, GntR family;
n=9; Gammaproteobacteria|Rep: Transcriptional regulator,
GntR family - Stenotrophomonas maltophilia R551-3
Length = 266
Score = 33.1 bits (72), Expect = 9.3
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 68 SHERHDAARPHRSAGR-QLTPRRRPLKARVCRSDRTTLRCALRGVGHLTG 214
SHER D ++PHR+ GR + P R L R R +CA G H TG
Sbjct: 67 SHERPDTSQPHRTRGRCRFDPDRAGLAGR-ANLPRFNRQCA--GRDHFTG 113
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,676,545
Number of Sequences: 1657284
Number of extensions: 16031329
Number of successful extensions: 44289
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 42026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44252
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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