Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120475.Seq
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    28   2.0  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   2.6  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    27   2.6  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   4.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.5  

>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 3   ETTEIKELTYQNGSLKNGFNKIHT 74
           ETTE+ EL    G   NGF KI T
Sbjct: 235 ETTELNELRSSIGQSDNGFEKIFT 258


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -3

Query: 524 DRQQSNGPSSHRRSRPANFNIDKTKFTFSSPLNHMYTR*I-TFKTTPIGLRKRRPRPQES 348
           D  Q +   S+      +  +++T  +  SP +   T  I T  T     R++R +P   
Sbjct: 351 DTPQQSVTGSYNSGETMSTYLNQTNTSGRSPNSMEATEQIGTIGTDGSMKRRKRRQPSNR 410

Query: 347 ARYVPRQPGYESQSTTEC 294
              VPR PG +S    EC
Sbjct: 411 KTSVPRSPGGKSFVCPEC 428


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 485 SRPANFNIDKTKFTFSSPLNHMYTR*ITFKTTPI-GLRKRRPRPQES--ARYVPRQPGYE 315
           +RP +F++  ++    S L  +YT+ I F  T + GL+   P PQ +     +P     E
Sbjct: 129 ARPTDFHLFLSQLAQESKLLRLYTQNIDFLETRLEGLQTCIPLPQSAPWPTTIPLHGTLE 188

Query: 314 SQSTTEC 294
             S T C
Sbjct: 189 VVSCTRC 195


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -3

Query: 509 NGPSSHRRSRPANFNIDKTKFTFSSPLNHMYTR*ITFKTTPIGLRKRRPRPQESARYVP 333
           N  +S  R    N N D      S    H   R    K+ P    K+RPR  E  R++P
Sbjct: 20  NSNNSMNRVENNNSNSDSANTVDSRGDAHTRMRQGFEKSFPSSPNKKRPRTNEGDRFIP 78


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = -1

Query: 655  IFS*LIFQLPFIYKLINI*FVTMVKQKHLSRKRTNDSSY--LRSFRIGNNPTDRRRTAGH 482
            + S  I +  F Y+L+N+ ++ ++K   +  +    SS+  + S+     P  ++     
Sbjct: 1799 VMSLFILRSQFPYELVNVVYMALLKSSPIEVRHLVKSSFDNIFSYIFSEEPESKKSPIWF 1858

Query: 481  VRPTLTLTKQNLHFRHHLTICTLDKSH 401
              P   ++ Q+ +    L +     SH
Sbjct: 1859 ELPLQVISSQSQNISQLLNVYDFISSH 1885


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,836
Number of Sequences: 5004
Number of extensions: 65248
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)