Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120475.Seq
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0722 - 22521909-22521932,22522291-22522419,22522976-225242...    32   0.68 
12_02_0534 - 20103908-20105897,20106314-20107116                       32   0.68 
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333...    29   3.6  
04_04_0796 + 28129350-28130405                                         29   3.6  
01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814...    29   4.8  

>12_02_0722 -
           22521909-22521932,22522291-22522419,22522976-22524242,
           22524659-22525461
          Length = 740

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -1

Query: 247 YAVSHMADGKQTG*VSDTAQRTP-QRCAIRSTDPSFKRAAARRQLPAGRTVRARGIV 80
           +  ++++DG+QTG  + TAQ+   +R ++ +++ S+    AR QL   R++   G V
Sbjct: 511 FVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKV 567


>12_02_0534 - 20103908-20105897,20106314-20107116
          Length = 930

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = -1

Query: 247 YAVSHMADGKQTG*VSDTAQRTP-QRCAIRSTDPSFKRAAARRQLPAGRTVRARGIV 80
           +  ++++DG+QTG  + TAQ+   +R ++ +++ S+    AR QL   R++   G V
Sbjct: 521 FVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKV 577


>12_02_0723 -
           22532379-22532902,22533060-22533135,22533195-22533380,
           22533459-22534323,22534740-22534918,22535168-22535542
          Length = 734

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/45 (31%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -1

Query: 247 YAVSHMADGKQTG*VSDTAQRTP-QRCAIRSTDPSFKRAAARRQL 116
           +  ++++DG+QTG  + TAQ+   +R ++ +++ S+    AR QL
Sbjct: 427 FVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQL 471


>04_04_0796 + 28129350-28130405
          Length = 351

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 12/155 (7%)
 Frame = -1

Query: 532 SFRIGNNPTDRRRTAGHVRPTLTLTKQNLHFRHHLTICTLDKSHLRLHL*GYGSGGRGPK 353
           +F IG    D+   A HVR        +L  R H  +  LD     L L    S    P 
Sbjct: 17  AFAIGATARDKLAAAYHVRSA------SLPCRFHPLVVQLDDDVAALRLVIGQSPPAAPS 70

Query: 352 SPHVTSRDNQVTN-----HSLLRN--AKTFIRRLERTVLQTRYAVS--HMADGK---QTG 209
           +  V++  +QV         LL +  A+  +RRL R+    R       +AD     +  
Sbjct: 71  ASSVSAAASQVGRVLVSLSELLHHPQAQEPLRRLGRSTFAERLLDDFLRLADAHGSFREA 130

Query: 208 *VSDTAQRTPQRCAIRSTDPSFKRAAARRQLPAGR 104
            V  +A +   R A+R  DP+   +AAR Q  AGR
Sbjct: 131 LVGLSALQAETRAALRRGDPARLASAARAQRRAGR 165


>01_06_0366 -
           28779899-28780543,28780813-28781076,28781165-28781431,
           28781546-28781774,28781868-28781985,28782229-28782486,
           28782585-28782858,28782950-28783475,28784289-28784527,
           28784626-28784847,28784912-28784914,28785124-28785299,
           28786147-28786201,28786288-28786557
          Length = 1181

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 533 ELPDRQQSNGPSSHRRSRPANFNIDKTKFTFSSPL 429
           +LPD +  +   S RRSR  +F     +++F SPL
Sbjct: 618 KLPDSRSKSTSLSFRRSRTKDFLSKSNRYSFKSPL 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,442,870
Number of Sequences: 37544
Number of extensions: 456107
Number of successful extensions: 1328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)