Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120475.Seq
(862 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 33 0.23
SB_4066| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.69
SB_14157| Best HMM Match : IncA (HMM E-Value=0.2) 30 2.1
SB_21817| Best HMM Match : Tim17 (HMM E-Value=2.4) 30 2.1
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23) 30 2.8
SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1) 29 4.9
SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4) 29 6.4
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 29 6.4
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 28 8.5
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.5
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 28 8.5
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -1
Query: 202 SDTAQRTPQRCAIRSTD-PSFKRAA 131
SDT Q TP++CA RS D PS KR+A
Sbjct: 3194 SDTVQDTPEKCAARSKDGPSAKRSA 3218
>SB_4066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 270 NAQYCKRVTLCLTWLTENRPVKCPTPRNA-HRSVVRSDRQTLALRGRRRG 124
+A Y R T+ + + RP +C PR+ H + DR+T+ +R + G
Sbjct: 118 DALYQNRETIQMPYTKTGRPYRCLIPRHGDHTDALYQDRETIQMRYTKTG 167
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 270 NAQYCKRVTLCLTWLTENRPVKCPTPRNA-HRSVVRSDRQTLALRGRRRGVSCR 112
+A Y R T+ + + RP +C PR H + + DR+T+ + + G S R
Sbjct: 22 DALYQDRKTIQMRYTKTGRPCRCVIPRQGDHTNALYQDRKTMQMPYTKTGRSYR 75
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -2
Query: 270 NAQYCKRVTLCLTWLTENRPVKCPTPRNA-HRSVVRSDRQTLALRGRRRG 124
+A Y R T+ + + RP +C PR H + DR+T+ + + G
Sbjct: 150 DALYQDRETIQMRYTKTGRPYRCLIPRQGDHTDALYQDRETIQMPYTKTG 199
>SB_14157| Best HMM Match : IncA (HMM E-Value=0.2)
Length = 556
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 267 AQYCKRVTLCLTWLTENRPVKCPTPRNAHRS 175
A + + V+ W+ E+R +CP P NA+RS
Sbjct: 192 ASFSEFVSSIRIWIREDRGRRCPPPANAYRS 222
>SB_21817| Best HMM Match : Tim17 (HMM E-Value=2.4)
Length = 293
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 267 AQYCKRVTLCLTWLTENRPVKCPTPRNAHRS 175
A + + V+ W+ E+R +CP P NA+RS
Sbjct: 134 ASFSEFVSSIRIWIREDRGRRCPPPANAYRS 164
>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
Length = 486
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/44 (31%), Positives = 18/44 (40%)
Frame = -1
Query: 520 GNNPTDRRRTAGHVRPTLTLTKQNLHFRHHLTICTLDKSHLRLH 389
G N RT H T T Q+ + H+T CT+ H H
Sbjct: 241 GYNRNIAVRTVQHAHHITTPTVQHARYNTHITACTVQHEHCGTH 284
>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
Length = 355
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +2
Query: 8 DRDQRADLPERFAKERIQQNSHERHDAARPHRSAGRQLTPRRRPLKARVCR 160
D+D++A + +R + + + AARP ++ RQ PR+ K + C+
Sbjct: 28 DQDKQA-VRQRQKSRKTSKPQDQDKQAARPRQARTRQARPRQATRKTKACK 77
>SB_49823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 28.7 bits (61), Expect = 6.4
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = -1
Query: 361 GPKSPHVTSRDNQVTNHSLLRNAKTFIRRLERT---VLQTRYAVSHMADGKQTG*VSDTA 191
G K H T R + + S + +RRL+R V+Q+ VS + GK+ + +
Sbjct: 67 GDKPIHATKRPSSKSQESTQSVTQPKVRRLDRAQKEVIQSFEGVSLGSLGKKLSRLENEQ 126
Query: 190 QRTPQRCAIRSTDPSFKRAAARRQLPAGRTVRAR 89
Q P RA RR A + R+R
Sbjct: 127 LERRQALHAEGRKPPVNRAKERRSSTAHQKRRSR 160
>SB_22299| Best HMM Match : Protamine_P2 (HMM E-Value=2.4)
Length = 488
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +2
Query: 8 DRDQRADLPERFAKERIQQNSHERHD--AARPHRSAGRQLTPRRRPLKARVCR 160
D+D++A P R +++ + + + D AARP R++ + P+++ + R R
Sbjct: 71 DKDKQAATPRRASRKTSKPSKLQDQDKQAARPRRASRKTSKPKKQAARPREAR 123
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3
Query: 533 ELPDRQQSNGPSSHRRSRPAN 471
E PDRQ+ PS HRRSRP N
Sbjct: 152 ESPDRQR---PSPHRRSRPRN 169
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 28.3 bits (60), Expect = 8.5
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 5/146 (3%)
Frame = -3
Query: 506 GPSSHRRSRPANFNIDKTKFTFSSPLNHMYTR*ITFKTTPIGLRKRRPRPQESARYVPRQ 327
GP ++ + P +++ + P+ Y IT T G+ +P P RY P
Sbjct: 83 GPGCNQ-TLPGIYHLQHIITRYIPPVTRPYQVYITCNQTLPGIYHLQPDP---TRYTPPA 138
Query: 326 PGYESQSTTEC*DFYPSIGTHSTANALRCVSHG*RKTDRLSVRHRATHTAALCDPIDRP* 147
Q T C P+ + N CVS G R HR + D ++ P
Sbjct: 139 TR-PYQVYTTCNQTLPASCVPACLNGGMCVSPGVCACTREYTGHRCEQETIMADSLNSPH 197
Query: 146 L-*EGGGAASVAGRQNGA----GARH 84
A ++A R GA G RH
Sbjct: 198 TSVRAARAVTIASRTMGACSTWGQRH 223
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 574 HLSRKRTNDSSYLRSFRIGNNPTDRRRTAGHVRPTLTLTKQNLHFRHHLTICTLDKS 404
H+S ND+S + S +I + D T GHV + T ++ R + I +LD+S
Sbjct: 4166 HVSVVNINDNSPVFSQKIYSASIDENTTVGHVILRVQATDRDHVNRSSIVIYSLDQS 4222
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 574 HLSRKRTNDSSYLRSFRIGNNPTDRRRTAGHVRPTLTLTKQNLHFRHHLTICTLDKS 404
H+S ND+S + S +I + D T GHV + T ++ R + I +LD+S
Sbjct: 4603 HVSVVNINDNSPVFSQKIYSASIDENTTVGHVILRVQATDRDHVNRSSIVIYSLDQS 4659
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 47 KERIQQNSHERHDAARPHR-SAGRQLTPRRRP 139
K +Q SH R + P R S R +PRRRP
Sbjct: 452 KSDLQSRSHSRSRSPSPRRRSRSRSRSPRRRP 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,122,778
Number of Sequences: 59808
Number of extensions: 538964
Number of successful extensions: 1728
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1725
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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