Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120475.Seq
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    31   1.4  
AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot...    28   9.8  
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot...    28   9.8  

>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +2

Query: 686 TVYTLREL*YFKYYHNPVTYSVNTI*YNT**SSMYLYHYINYNFILRQLPLSCYII 853
           T+YT+ ++ +  Y ++  TY+ + I +      +Y  H IN  +I+  + L+CY I
Sbjct: 33  TIYTIHQIYHIYYIYHIYTYTKSPIYHIHHIYQIYHIHIINTLYIIFGVFLACYAI 88


>AF101312-2|AAC69222.2|  475|Caenorhabditis elegans Hypothetical
           protein F56E10.3 protein.
          Length = 475

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 678 LTIAIKKIFSPN*YSNYRLFTSLSIFSL 595
           L++ I +IF  N YS    +TS+S+FSL
Sbjct: 172 LSVYISRIFQENLYSTTTTYTSISLFSL 199


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 373 FRSPIGVVLNVIYLVYIWLSGDENV 447
           F +P G  L++ Y   +W+S D NV
Sbjct: 314 FAAPFGFPLSLAYFTKVWMSQDRNV 338


>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 20   RADLPERFAKERIQQNSHERHDAARPHRSAGRQLTPRRRP 139
            RA +P R  K   Q  + +  D   P RS  RQL P   P
Sbjct: 1199 RARMPSRVLKTPRQVKTFQEEDDEAPKRSTTRQLKPLVAP 1238


>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein 1
            protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 20   RADLPERFAKERIQQNSHERHDAARPHRSAGRQLTPRRRP 139
            RA +P R  K   Q  + +  D   P RS  RQL P   P
Sbjct: 1199 RARMPSRVLKTPRQVKTFQEEDDEAPKRSTTRQLKPLVAP 1238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,252,641
Number of Sequences: 27780
Number of extensions: 383686
Number of successful extensions: 1014
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)