Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120475.Seq
         (862 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13350.1 68414.m01550 protein kinase family protein contains ...    29   3.0  
At5g62780.1 68418.m07881 DNAJ heat shock N-terminal domain-conta...    29   4.0  
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    28   7.0  

>At1g13350.1 68414.m01550 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069 (likely that this
           cDNA contains a single unspliced intron. Putative intron
           removed in this gene model.)
          Length = 761

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
 Frame = +2

Query: 8   DRDQRADLPERFAKERIQQNSHERHDAARPHRSAGRQLTPRRRPL----KARVCRSDRTT 175
           DRD R D  + + ++R       R  A    R  GR+    RR      K R  +SDR  
Sbjct: 133 DRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREK 192

Query: 176 LRCALRGVGHLTGLFSVSHVRH 241
            +    G G +    S  H RH
Sbjct: 193 HKSLDDGYGEVRHKHS-GHSRH 213


>At5g62780.1 68418.m07881 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam PF00226: DnaJ
           domain; similar to dnaJ (GI:144832) [Clostridium
           acetobutylicum]
          Length = 207

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -3

Query: 527 PDRQQSNG---PSSHRRSRPANFNIDKTKFTFSSPLNHMYTR*ITFKT 393
           PD+ + NG   P+S   S+P +        TFS+  N   TR   F T
Sbjct: 47  PDKNRFNGAEEPASSSSSKPVDMTFSTVSMTFSTVCNKCTTRCCHFST 94


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
           repair and meiosis protein Rad9 [Coprinus cinereus]
           GI:1353390, SP|Q09725 Sister chromatid cohesion protein
           mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 270 NAQYCKRVTLCLTWLTENRPV--KCPTPRNAHRSVVRSDRQ 154
           N++YC   TL  +WLT+   V  K P+ + A R+ +  D +
Sbjct: 429 NSKYCTTETLHYSWLTQGPVVGRKLPSSKRALRAYLLPDEE 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,061
Number of Sequences: 28952
Number of extensions: 343278
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)