Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120474.Seq
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 31 0.15
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.4
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 2.4
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 4.2
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 7.4
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 26 7.4
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 7.4
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 26 7.4
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 9.8
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 25 9.8
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 235 IPL*TRLKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYEL 369
+ L T L +VVD+C+K K N V+++ + N KI Y+L
Sbjct: 107 LTLRTNLHVSVVDRCLKSLESK-NLVKSIKSVKNPTRKIYMLYDL 150
>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -1
Query: 360 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 259
GF+ + I A+ F DRS VAF +F + L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = -2
Query: 473 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 294
+ R+LSIA +LLS + + R+ + + N+ S V + T SV V+ L +
Sbjct: 14 LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69
Query: 293 RFIFIHLSTTF 261
R+ + T+
Sbjct: 70 RYYYEQEDVTY 80
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 641 GNACVISFSDHKLHFVSKISNK 576
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 379 DLKNLS-SL-ESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKETLGKL 525
D+K LS SL ++ + LSK +A L L P + ++KE GKL
Sbjct: 184 DMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEASGKL 234
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 549 AFIHNRFHPLV---TNFTNKMEFVVTETNDTS 635
AFI N++ PLV T++TN V +TN S
Sbjct: 112 AFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 644 SGNACVISFSDHKLHFVSKISNKW 573
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 41 NSKHVFDHFGCSSNYCFNNYV 103
N VF+H CS Y FNN V
Sbjct: 2 NGLRVFEHVHCSVLYKFNNIV 22
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 604 SILLVKLVTSGWNLLCIKANV 542
S +L L+ GW ++C ANV
Sbjct: 19 SCILAWLIEEGWEVICYMANV 39
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 432 GAQQIHGYAQHPGNDPAAVGNI*KQRDTRQIAAVVFSTLAFIHNR 566
GA++I +Q P + ++ GN + + QI+ +V+ + F +R
Sbjct: 326 GAKKIAKCSQRPPKESSSTGNHYPKLEQYQISDMVYDIICFASDR 370
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,444
Number of Sequences: 5004
Number of extensions: 58310
Number of successful extensions: 173
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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