Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120474.Seq
         (819 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     32   0.63 
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     32   0.63 
07_01_0865 - 7193079-7193408,7194085-7194135,7194230-7194400           29   3.4  
06_03_0757 + 24267599-24268882                                         29   4.4  
03_01_0298 + 2318836-2319051,2321238-2323106                           29   4.4  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    29   5.9  

>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +1

Query: 277 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 456
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 457 LSTLEMTQ 480
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +1

Query: 277 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 456
           CI+  +  C  +R+    + + E + +TYE+ E  LK  ++ E    + +     K +A 
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289

Query: 457 LSTLEMTQ 480
             TL++ Q
Sbjct: 290 AETLDVKQ 297


>07_01_0865 - 7193079-7193408,7194085-7194135,7194230-7194400
          Length = 183

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 561 CV*KLMC*TPRRQFAECLFVSKYFQQRLGHFQGAEHSHVFAERQFNFQSFI 409
           C    +C  P+    E LF+    +  +  F+G+EH   F +R+F + + +
Sbjct: 79  CSASCICNRPQAWKTEDLFLDSLQEVEISGFRGSEHELAFLKRRFGWAAIL 129


>06_03_0757 + 24267599-24268882
          Length = 427

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 428 NWRSANTWLCSAPWK*PSRCWK 493
           +WR A  W+C  PW    + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369


>03_01_0298 + 2318836-2319051,2321238-2323106
          Length = 694

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 38  ANSKHVFDHFGC-SSNYCFNNYVCSI*Q**WKQL 136
           A   H F HF C SSN    NYVC + +  WK+L
Sbjct: 92  AECSHEF-HFHCISSNVNHGNYVCPVCRAEWKEL 124


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/65 (29%), Positives = 35/65 (53%)
 Frame = +1

Query: 322 TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFR 501
           TE+  S+++  K  E+ E D+ + S  + YET ++  + SK    LS L   +P  + + 
Sbjct: 84  TELQLSNDRQSKPDEVTEDDMPSTSGRQLYET-EVPASSSKKHCSLSPLPAYEPAFD-WE 141

Query: 502 NKETL 516
           N+ +L
Sbjct: 142 NERSL 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,007,844
Number of Sequences: 37544
Number of extensions: 351581
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)