Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120474.Seq
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         30   2.6  
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)                 28   7.9  

>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 769  SYLFKSLLKP-RCQTRGFSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILL 593
            +++  ++LK  R  T+ F I+  DGLS +   TPS ++  +G     + + S+     LL
Sbjct: 1825 TFVLDNVLKTVRTNTKNFVIIITDGLSQDDVQTPSQALRDVGVTVFSIGVGSLINKEQLL 1884

Query: 592  V 590
            +
Sbjct: 1885 I 1885


>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 274 KCIKMKRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 450
           K  + KR    K++ T  E+V   +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 68  KSAEAKRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/84 (25%), Positives = 40/84 (47%)
 Frame = +1

Query: 253  LKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKL 432
            ++A + +KC ++  V+  K   V+ I   DEK+ +  +  E  L +L+S    +   +++
Sbjct: 978  IQAQLEEKCTELGNVESEKQYLVSMINERDEKLYEIQDSFEAQLLDLTSSRDND---VEI 1034

Query: 433  ALSKYMAMLSTLEMTQPLLEIFRN 504
              S+  +M   L   Q   E  RN
Sbjct: 1035 LRSEQESMHQVLTERQQECETLRN 1058


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/84 (25%), Positives = 40/84 (47%)
 Frame = +1

Query: 253  LKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKL 432
            ++A + +KC ++  V+  K   V+ I   DEK+ +  +  E  L +L+S    +   +++
Sbjct: 926  IQAQLEEKCTELGNVESEKQYLVSMINERDEKLYEIQDSFEAQLLDLTSSRDND---VEI 982

Query: 433  ALSKYMAMLSTLEMTQPLLEIFRN 504
              S+  +M   L   Q   E  RN
Sbjct: 983  LRSEQESMHQVLTERQQECETLRN 1006


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = -3

Query: 712 LTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTNSILLVKLV 581
           LT++ L  + + T + S    +G   ++VS+ SVTTNS++LV ++
Sbjct: 760 LTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTNSLILVVII 804


>SB_29724| Best HMM Match : 7tm_1 (HMM E-Value=6.6e-05)
          Length = 435

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 436 LSKYMAMLSTLEMTQPLLEIFRNKETLGKLPPWCLAH*LLYTIDSI 573
           +S    ML+ L  T PL+ +   ++TLG++P +C    L  T+  +
Sbjct: 87  ISASCLMLTLLSYTVPLISMNATQKTLGEVPLFCYWSALFETLGCV 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,429,558
Number of Sequences: 59808
Number of extensions: 423497
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)