Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120474.Seq
(819 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 29 4.0
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 29 4.0
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 29 5.3
U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical p... 28 7.0
AL021446-1|CAA16265.1| 398|Caenorhabditis elegans Hypothetical ... 28 7.0
Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical p... 28 9.2
Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical pr... 28 9.2
Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical p... 28 9.2
Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical p... 28 9.2
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical ... 28 9.2
AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical ... 28 9.2
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical protein
R03E1.1 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 612 VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 713
+T + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 612 VTETNDTSIPGEPILFTENEGVLLCSVDRPSIVK 713
+T + SIPG I+ + GV+ ++RP +VK
Sbjct: 992 LTSNGNLSIPGHVIISADLNGVIKVMINRPRLVK 1025
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 706 IDGLSTEHNSTPSFSVNKMGSPGML 632
I L T H STPS ++ SPGM+
Sbjct: 142 ISDLRTPHGSTPSTGTPRLSSPGMV 166
>U64833-11|AAB04822.2| 615|Caenorhabditis elegans Hypothetical
protein B0507.1 protein.
Length = 615
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 640 PENPFCLQKTRGCCCAPSTD 699
PEN FC + T G CC P D
Sbjct: 166 PENGFC-ETTTGFCCVPGVD 184
>AL021446-1|CAA16265.1| 398|Caenorhabditis elegans Hypothetical
protein F14F4.1 protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 11 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 97
C R+ F + K F++F CSS NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364
>Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 186 PSATGFMNPLNATMRANPFMNTPKGKCCR*VYKNETCQMQQSS 314
PS+TG P A + P +TPK K Q+QQ S
Sbjct: 552 PSSTGSSTPTQAVKTSTPIHSTPKSSSSS--AKKTAAQLQQQS 592
>Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 186 PSATGFMNPLNATMRANPFMNTPKGKCCR*VYKNETCQMQQSS 314
PS+TG P A + P +TPK K Q+QQ S
Sbjct: 549 PSSTGSSTPTQAVKTSTPIHSTPKSSSSS--AKKTAAQLQQQS 589
>Z81494-14|CAJ43905.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 295 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 414
V+ K+R + E V +DEK+ KT+E E K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196
>Z81494-8|CAB54212.3| 707|Caenorhabditis elegans Hypothetical
protein F02E9.9a protein.
Length = 707
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 295 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 414
V+ K+R + E V +DEK+ KT+E E K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158
>Z81057-7|CAJ43903.2| 745|Caenorhabditis elegans Hypothetical
protein F02E9.9b protein.
Length = 745
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 295 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 414
V+ K+R + E V +DEK+ KT+E E K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196
>Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 186 PSATGFMNPLNATMRANPFMNTPKGKCCR*VYKNETCQMQQSS 314
PS+TG P A + P +TPK K Q+QQ S
Sbjct: 552 PSSTGSSTPTQAVKTSTPIHSTPKSSSSS--AKKTAAQLQQQS 592
>Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 186 PSATGFMNPLNATMRANPFMNTPKGKCCR*VYKNETCQMQQSS 314
PS+TG P A + P +TPK K Q+QQ S
Sbjct: 549 PSSTGSSTPTQAVKTSTPIHSTPKSSSSS--AKKTAAQLQQQS 589
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 706 IDGLSTEHNSTPSFSVNKMGSPGML 632
I L T H STPS ++ SPGM+
Sbjct: 222 ISDLRTLHGSTPSTGTPRLSSPGMV 246
>AF039038-8|AAM81097.1| 874|Caenorhabditis elegans Hypothetical
protein K06A5.8a protein.
Length = 874
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 400 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 299
N LDF+ ++P+ F FG+F + FEL C+
Sbjct: 80 NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114
>AF039038-7|AAM81098.1| 942|Caenorhabditis elegans Hypothetical
protein K06A5.8b protein.
Length = 942
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 400 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 299
N LDF+ ++P+ F FG+F + FEL C+
Sbjct: 80 NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,769
Number of Sequences: 27780
Number of extensions: 329790
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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