Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120473.Seq
         (835 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7Q190 Cluster: ENSANGP00000013304; n=2; Culicidae|Rep:...    57   5e-07
UniRef50_Q54LY5 Cluster: ATP-dependent DNA helicase; n=1; Dictyo...    45   0.003
UniRef50_Q8S562 Cluster: KAP-2; n=8; Magnoliophyta|Rep: KAP-2 - ...    40   0.10 
UniRef50_UPI0000DB7853 Cluster: PREDICTED: similar to X-ray repa...    39   0.18 
UniRef50_Q6BXN4 Cluster: Debaryomyces hansenii chromosome B of s...    36   0.95 
UniRef50_Q5AVW5 Cluster: Putative uncharacterized protein; n=1; ...    36   1.7  
UniRef50_A7PY92 Cluster: Chromosome chr15 scaffold_37, whole gen...    35   2.2  
UniRef50_Q4UIN4 Cluster: Cysteine repeat modular protein 2 homol...    33   8.8  

>UniRef50_Q7Q190 Cluster: ENSANGP00000013304; n=2; Culicidae|Rep:
           ENSANGP00000013304 - Anopheles gambiae str. PEST
          Length = 734

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
 Frame = +2

Query: 251 QKSFYDMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSVAEQAPGEFKHIELLSAL 430
           ++SF+D A+ CA+ I++  I S A N +VG++L G+  T N +   + G +++I     L
Sbjct: 29  KQSFFDKAKTCASLIVQRLIFS-APNDHVGIVLFGTDETNNQLNVDS-GGYENITEAFEL 86

Query: 431 QTPTWQMIRELPES--PSKSKGDWMDALL 511
           + P WQ +R L      ++S+  W DAL+
Sbjct: 87  KPPNWQTLRILQNQVVQTESEAGWFDALI 115


>UniRef50_Q54LY5 Cluster: ATP-dependent DNA helicase; n=1;
           Dictyostelium discoideum AX4|Rep: ATP-dependent DNA
           helicase - Dictyostelium discoideum AX4
          Length = 796

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
 Frame = +2

Query: 311 LSQAKNSYVGVILLGSKNTKNSVAEQAPGEFKHIELLSALQTPTWQMIRELPE-SPSKSK 487
           L   K   +G++L+G+K TKN++ +     ++HI ++S ++ P+ + ++ L   +P +SK
Sbjct: 51  LIYGKKDQLGLVLIGTKGTKNNLQDDG---YQHITVVSDIEEPSIETLKYLENLAPGESK 107

Query: 488 GDWMDALL 511
           GD +D+L+
Sbjct: 108 GDVIDSLI 115


>UniRef50_Q8S562 Cluster: KAP-2; n=8; Magnoliophyta|Rep: KAP-2 -
           Phaseolus vulgaris (Kidney bean) (French bean)
          Length = 686

 Score = 39.5 bits (88), Expect = 0.10
 Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +2

Query: 278 ECAARIIETKILSQAKNSYVGVILLGSKNTKNSVAEQAPGEFKHIELLSALQTPTWQMIR 457
           E A  ++  K L  +KN  VG++L G+++T N +  +  G ++H+ +L   +     ++ 
Sbjct: 26  EKACSLLVQKKLVFSKNDEVGIVLFGTEDTDNELTTEV-GGYQHVVVLKNTKVVDGDIVE 84

Query: 458 ELPESP-SKSKGDWMDALL 511
            L   P   + GD++DA++
Sbjct: 85  ALQHLPRGTTDGDFVDAVI 103


>UniRef50_UPI0000DB7853 Cluster: PREDICTED: similar to X-ray repair
           complementing defective repair in Chinese hamster cells
           5; n=1; Apis mellifera|Rep: PREDICTED: similar to X-ray
           repair complementing defective repair in Chinese hamster
           cells 5 - Apis mellifera
          Length = 517

 Score = 38.7 bits (86), Expect = 0.18
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 SFYDMARECAARIIETKILSQAKNSYVGVILLGSKNTKNSVAEQAPGEFKHIELLSALQT 436
           S ++ A+  A R IE  I  + K+  + ++L+GS  TKN++        K+IE  +  Q 
Sbjct: 25  SLFEKAKYIAQRKIEKMIFLKPKDE-IAIMLMGSSITKNNL------NSKYIEEFTDFQV 77

Query: 437 PTWQMIRELPESPS-KSKGDWMDAL 508
           P W  +R+     S K   +W++AL
Sbjct: 78  PNWDFVRKCMNLKSTKYCYNWVEAL 102


>UniRef50_Q6BXN4 Cluster: Debaryomyces hansenii chromosome B of
           strain CBS767 of Debaryomyces hansenii; n=1;
           Debaryomyces hansenii|Rep: Debaryomyces hansenii
           chromosome B of strain CBS767 of Debaryomyces hansenii -
           Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
          Length = 723

 Score = 36.3 bits (80), Expect = 0.95
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 293 IIETKILSQAKNSYVGVILLGSKNTKNSVAEQAPGEFKHIELLSALQTPTWQMIRELPE- 469
           I+  KIL   K  Y+ VI   S  T+N  + +    FK+IE++S    PT+  +R+  E 
Sbjct: 39  IVTNKILRGRKTDYISVITCHSNRTENPFSSE--DSFKNIEVVSNKIAPTYDDLRKYKEL 96

Query: 470 -SPSKSK 487
             P+K++
Sbjct: 97  LCPNKTE 103


>UniRef50_Q5AVW5 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 544

 Score = 35.5 bits (78), Expect = 1.7
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 610 HDEIQQVLNGFKADNLEVNVIGPNLY-DEGNIKNNDFELARLFVEETKGVAELLDR 774
           HD + ++ N F A  +E+N  GPN + +E ++ N DF +    ++E K  A+ +++
Sbjct: 191 HDTMHELKNAFTAMRIELN--GPNRFLNEQDLANTDFNMVTTVLKELKSKADEIEK 244


>UniRef50_A7PY92 Cluster: Chromosome chr15 scaffold_37, whole genome
           shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome
           chr15 scaffold_37, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 690

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 323 KNSYVGVILLGSKNTKNSVAEQAPGEFKHIELLSALQTPTWQMIRELPESPSKS-KGDWM 499
           K   VG++L G+K TKN + ++  G +K++ +   ++     ++  + E P  +  GD++
Sbjct: 43  KKDLVGIVLFGTKVTKNELTKKV-GGYKYVLVSQDIKVVDGDLVEAVRELPRGTFAGDFL 101

Query: 500 DALL 511
           DA++
Sbjct: 102 DAIV 105


>UniRef50_Q4UIN4 Cluster: Cysteine repeat modular protein 2 homologue,
            putative; n=3; Theileria|Rep: Cysteine repeat modular
            protein 2 homologue, putative - Theileria annulata
          Length = 2798

 Score = 33.1 bits (72), Expect = 8.8
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 616  EIQQVLNGFKADNLEVNVIGPNLYDEGNIKNN 711
            EI+ +L G+  ++ E+N I  +LYDE  +KNN
Sbjct: 2612 EIENILEGYGIESDEINGIINSLYDESYLKNN 2643


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,001,315
Number of Sequences: 1657284
Number of extensions: 13734838
Number of successful extensions: 30225
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30222
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 72553824147
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)